Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00870 218 / 5e-66 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46830 200 / 2e-58 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G32640 172 / 3e-47 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 164 / 2e-44 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 162 / 2e-43 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G16430 158 / 3e-43 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 133 / 1e-33 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G01260 110 / 1e-25 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G00480 100 / 2e-22 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G41315 77 / 1e-14 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147300 [exp] 757 / 0 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 456 / 8e-158 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 444 / 7e-153 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 162 / 2e-43 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G042000 [exp] 157 / 2e-42 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 159 / 3e-42 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.005G221100 [exp] 150 / 1e-39 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 133 / 2e-33 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 125 / 1e-30 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005999 [exp] 331 / 5e-109 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 163 / 2e-47 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 168 / 2e-45 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030212 [exp] 159 / 8e-45 AT4G00870 135 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000484 [exp] 165 / 2e-44 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 161 / 5e-44 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 160 / 1e-42 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024871 [exp] 152 / 1e-40 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018787 [exp] 132 / 2e-33 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 120 / 5e-29 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G083500.1 pacid=42793281 polypeptide=Potri.001G083500.1.p locus=Potri.001G083500 ID=Potri.001G083500.1.v4.1 annot-version=v4.1 ATGGAAGAGATACTGTCCTCCTCTTCTTCATCTTCACTCATGTCATTTGCCCAAGAAACCTCTTCAACACTTCAACAACGCCTCCAATTCTTCCTTCATA GCCGGCCAGAATGGTGGGTTTACTCCATCTTCTGGCAGGCATCAAAAGATGCCAGCGGCCGCCTTGTTTTATCATTGGGCGATGGCCATTTCCGTGGGAA TAAAAAGTATGCAAGCAAGGAAAGCAACAAGCAAAACCATTCCAAATTCGGCTTCAATCTTGAAAGAAAGTCCCTTTTCAATGAGGATATGGACATGGAC AGATTGGTTGAAGGTGATGTTGCTGAATGGTACTACACAGTATCGGTAACACGAGCATTTGCCGTTGGAGATGGAATTCTTGGCAGGGCATTTAGCTCTG GCGCTTTCATTTGGTTGACAGGTGATCACGAACTGCAAATTTATGACTGCGAGAGAGTCAAAGAAGCTCGGATGCATGGAATTCAGACTTTCGTCTGTGT TTCAACTCCATCCGGGGTTCTTGAATTGGGTTCCCCGGATTTGATCAGTGAAGATTGGGGCCTAGTGCAATTAGCCAAATCAATTTTTGGTGCAGACATC AATGCAGGTTCAGTTCCAAAGCAGGCCAACCAGGAATCTCAACCTCAAATTCCAAACCGCACTGTTTCTAATTTCCTTGATTTTGGAATGTTTTCAAGTC CTCAAAAGGAGAGAACAACTTGTCTAGAGAATCAAAAAGAAAGCGACACACGGAAAGAACCCTCAGGCCAAGGCCGATCGTCTTCGGACTCAGGGCGTTC TGATTCAGATGCTGGATTCACAGAGAATAATATCGGGTTCAAGAAGAGAGGAAGAAAGCCAAGTGGAAAAGAATTGCCTCTAAACCATGTGGAAGCAGAA AGGCAGCGAAGAGAGAGGCTAAATCATCGATTCTATGCACTTCGATCCGTGGTCCCGAATGTGTCAAAGATGGACAAAGCATCTTTGCTCGCAGATGCAG CTACTTACATTAAAGAGCTCAAGAGCAAAGTTAATGAATTGGAAGGCAAGCTGCGAGCAGTATCCAAGAAATCAAAAATCTCTGGTAATGCGAACATTTA TGACAACCAAAGCACCAGCACCAGCACCATGACGAATCACATAAGGCCCACTCCAAATTATATGTCCAATAATGCAATGGAAGTGGATGTGAAGATTTTG GGATCGGAAGCTCTGATCCGTGTACAATCCCCGGATGTTAATTATCCAGCTGCAAGATTGATGGATGCACTTAGAGAGCTGGAGTTTTCAGTCCATCACG CGAGCGTGTCCAAGGTCAAGGAGCTGGTGCTTCAAGATGTTGTGATTATAATTCCTGATGGATTGGTAACTGAAGAAGTTATGAGGGCTGCTATTTTTCA AAGAATGCAGAACTAA
AA sequence Show only first row Show all	>Potri.001G083500.1 pacid=42793281 polypeptide=Potri.001G083500.1.p locus=Potri.001G083500 ID=Potri.001G083500.1.v4.1 annot-version=v4.1 MEEILSSSSSSSLMSFAQETSSTLQQRLQFFLHSRPEWWVYSIFWQASKDASGRLVLSLGDGHFRGNKKYASKESNKQNHSKFGFNLERKSLFNEDMDMD RLVEGDVAEWYYTVSVTRAFAVGDGILGRAFSSGAFIWLTGDHELQIYDCERVKEARMHGIQTFVCVSTPSGVLELGSPDLISEDWGLVQLAKSIFGADI NAGSVPKQANQESQPQIPNRTVSNFLDFGMFSSPQKERTTCLENQKESDTRKEPSGQGRSSSDSGRSDSDAGFTENNIGFKKRGRKPSGKELPLNHVEAE RQRRERLNHRFYALRSVVPNVSKMDKASLLADAATYIKELKSKVNELEGKLRAVSKKSKISGNANIYDNQSTSTSTMTNHIRPTPNYMSNNAMEVDVKIL GSEALIRVQSPDVNYPAARLMDALRELEFSVHHASVSKVKELVLQDVVIIIPDGLVTEEVMRAAIFQRMQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.001G083500 [exp]	0	1
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.003G147300 [exp]	1.00	0.9415
AT2G35215			unknown protein		Potri.003G092100 [exp]	2.44	0.8866
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Potri.003G132300 [exp]	3.00	0.9077	Pt-ACS2.2
					Potri.006G038201 [exp]	5.29	0.8744
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.016G112400 [exp]	8.00	0.9029
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	13.11	0.8318
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142000 [exp]	13.34	0.9122
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.009G081800 [exp]	17.20	0.8744
AT2G35390			Phosphoribosyltransferase fami...		Potri.001G145700 [exp]	17.57	0.8193
					Potri.006G038300 [exp]	25.78	0.8925

Compare expression of checked genes

Potri.001G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.