Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) AT1G19900 489 / 2e-168 glyoxal oxidase-related protein (.1) AT1G75620 485 / 4e-167 glyoxal oxidase-related protein (.1) AT3G57620 482 / 8e-166 glyoxal oxidase-related protein (.1) AT1G67290 429 / 2e-144 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 419 / 7e-141 glyoxal oxidase-related protein (.1) AT3G53950 391 / 2e-130 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027000 [exp] 521 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 515 / 5e-179 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 507 / 1e-175 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 501 / 4e-173 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 496 / 2e-171 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 494 / 1e-170 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 453 / 9e-154 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 452 / 3e-153 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 405 / 5e-136 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015949 [exp] 512 / 2e-177 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 489 / 3e-168 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 484 / 4e-167 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 433 / 8e-146 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 436 / 1e-145 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 412 / 2e-138 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 415 / 4e-138 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 411 / 4e-138 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 412 / 2e-137 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 407 / 2e-133 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [poplar] [flax] Glyoxal_oxid_N Glyoxal oxidase N-terminus CL0159 [poplar] [flax] E-set PF09118 [poplar] [flax] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Potri.001G083600.1 pacid=42789547 polypeptide=Potri.001G083600.1.p locus=Potri.001G083600 ID=Potri.001G083600.1.v4.1 annot-version=v4.1 ATGACAACAAAATCCTTGGTATGTCTAATCCTGGTAACCAGTTCACTGTTCACATTAGCATTAGGCAGCCAAACACACCGAGGAAAATGGAAGTTATTGA AGAGAAGCATCGGAATTTCAGCAATGCACATGCAATTGTTACCAAATGATAAAATCATCGCATTTGACTGGAATTCCGGTCCATCCAACATTTCTCTACC AGGAGGAAAGTGCGTTGTTGCTTCAGAAACTACGACTAATTGCTATTCACATTCTGTAGAGTTTGATCCCTCCAGCCGGAGTATCCGACCGCTTACCATT ACAACCGATACATGGTGCTCTTCAGGTGCGTTGTTGCAAAACGGTATTCTAATCCAGAGTGGTGGATTCAGGCTTGGAGATCGAGTGGTTCGGTCTCTTA CACCGTGTGCAAATTGTGATTGGGTTGAAAAAAAGAATGGTCTAATTACTTCAAGATGGTATGCATCAAATCAAATTTTACCAAATGGGAAAATCATTGT TGTTGGGGGCTTAAATCAATTCAATTATGAGTTCATTCCGAAAACTTCTACTTCTGATCAAACACTGTACCAGCTTCCATTTCTGGAAGAAACCAGATAT TCCCCACTCATTCCCAACAATCTTTATCCTTTCCTACACCTCACTCCTGGTGGAAAGTTATTCATTTTCGCTAATGACCGTGCAATTCTACTAGACCATG TCAACAACAAGGTGGTTAAGAACTATCCTGTCATGCCCGGAGGCGTTTCCCGCAACTATCCTAGTACAGGTTCCTCAGTTCTGCTTCCTCTTATCCTTTC CAGCAATTTCAACAGCCACCCAGAGGCTGCAGTTTTTATCTGTGGTGGGACAGTACCAGACTCAAACCAAAAGGTAAATGCAGGAGTCTTCATTACTGCT TCCAAATCTTGCGGTCGACTAGTAATAACTGCCAATAATCCAAGCTGGGAAATGGAAGAAATGCCTCTCAATAGATTGATGGGAGACATGATTTTGTTGC CTACAGGTGATGTACTTATCATTAATGGTGCGGCAAAAGGATCAGCTGGCTGGTATGCAGGTAGGGAACCAGTGCTAAACCCAGTTCTTTACCGGCCTAA TGCACCTATCACTGCTAAAACTAGCAGGTTTGAGATAATGAGTCCCTCAAAAATTCCACGTCTTTACCATTCAACAGCCCATTTGCTATCAGATGGTCGT GTTTTGGTGGGTGGAAGCAATCCAAATAGTAACTACAACTTCACTGCTCTTTATCCAACTGAGCTAAGTGTTGAAGTATTTTATCCACCATATTTTAGCC CCAACGTTTCTAGACCATTAATTAGTAAGATAAATCCAGGGACCAATCTTGAATACAAGCAGAAATTCACCATGCATTTTCACATACATCAGTGGCATGA AGAGCTTGGAAAGATTTATGTGACAATGGTGGCACCATCTTTTACTTCACATTCCTATTCCATGAATCAAAGGTTGCTGGTTTTGGCTCTGGACAGTGAA GCCCAAAAGGTGGATTTCAGCAACTATGTTGTTGATGTCCATGCACCGGCAACTGCAACACTGGCACCTCCGGGATATTACCAGTTATTTGTGGTCCATG AAGGTGTTCCCAGTAAAGGAACATGGGTCCATATCAAGTAG
AA sequence Show only first row Show all	>Potri.001G083600.1 pacid=42789547 polypeptide=Potri.001G083600.1.p locus=Potri.001G083600 ID=Potri.001G083600.1.v4.1 annot-version=v4.1 MTTKSLVCLILVTSSLFTLALGSQTHRGKWKLLKRSIGISAMHMQLLPNDKIIAFDWNSGPSNISLPGGKCVVASETTTNCYSHSVEFDPSSRSIRPLTI TTDTWCSSGALLQNGILIQSGGFRLGDRVVRSLTPCANCDWVEKKNGLITSRWYASNQILPNGKIIVVGGLNQFNYEFIPKTSTSDQTLYQLPFLEETRY SPLIPNNLYPFLHLTPGGKLFIFANDRAILLDHVNNKVVKNYPVMPGGVSRNYPSTGSSVLLPLILSSNFNSHPEAAVFICGGTVPDSNQKVNAGVFITA SKSCGRLVITANNPSWEMEEMPLNRLMGDMILLPTGDVLIINGAAKGSAGWYAGREPVLNPVLYRPNAPITAKTSRFEIMSPSKIPRLYHSTAHLLSDGR VLVGGSNPNSNYNFTALYPTELSVEVFYPPYFSPNVSRPLISKINPGTNLEYKQKFTMHFHIHQWHEELGKIYVTMVAPSFTSHSYSMNQRLLVLALDSE AQKVDFSNYVVDVHAPATATLAPPGYYQLFVVHEGVPSKGTWVHIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	0	1
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	1.00	0.9970
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094000 [exp]	1.73	0.9956
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	3.16	0.9962
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	4.00	0.9948
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.009G141100 [exp]	4.24	0.9855	SAUR55
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	4.47	0.9952
AT5G39240			unknown protein		Potri.004G119600 [exp]	5.47	0.9951
AT5G18060			SAUR-like auxin-responsive pro...		Potri.009G126300 [exp]	7.41	0.9934
AT4G33800			unknown protein		Potri.002G117600 [exp]	7.74	0.9947
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	7.93	0.9947

Compare expression of checked genes

Potri.001G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.