Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATHB.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46680 131 / 1e-37 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 126 / 4e-36 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT4G40060 104 / 4e-27 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 103 / 1e-26 HD ATHB6 homeobox protein 6 (.1) AT5G65310 98 / 8e-25 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01470 97 / 2e-24 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 92 / 1e-22 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G26960 89 / 2e-21 HD ATHB23 homeobox protein 23 (.1) AT2G18550 87 / 6e-21 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT5G15150 88 / 7e-21 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103000 [exp] 138 / 9e-41 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.002G176300 [exp] 138 / 1e-40 AT2G46680 219 / 1e-71 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.012G023700 [exp] 130 / 2e-37 AT2G46680 147 / 4e-43 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.007G097100 [exp] 101 / 7e-26 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 101 / 1e-25 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.012G070900 [exp] 100 / 1e-25 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.015G065400 [exp] 100 / 2e-25 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 97 / 3e-24 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.017G081700 [exp] 91 / 4e-22 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030214 [exp] 130 / 2e-37 AT2G46680 208 / 5e-67 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10032952 [exp] 120 / 1e-33 AT2G46680 142 / 1e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10008840 [exp] 117 / 1e-32 AT2G46680 140 / 5e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10023159 [exp] 101 / 5e-26 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10030800 [exp] 100 / 1e-25 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 100 / 1e-25 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 100 / 2e-25 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 100 / 3e-25 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 99 / 5e-25 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 99 / 7e-25 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.001G083700.1 pacid=42791683 polypeptide=Potri.001G083700.1.p locus=Potri.001G083700 ID=Potri.001G083700.1.v4.1 annot-version=v4.1 ATGGATCCAGGCACGCACCCTTTATCAAGCATTCAAAAGAATGCATACAAGAGAAGGTTTACTGATGAACAAATCAAGTTCCTGGAATTCATGTTCGAGT CAGAATCAAGACCGGAGTCTCGGGTTAAACAGCAGCTGGCTAGTGAGCTTGGGCTAGAGCCTCGACAGGTTGCTATATGGTTTCAGAACAGGAGAGCTAG ACTGAAGACTAAACAGATTGAGAAAGAGTACAGTATACTGAAAGCAAGTTATGATGTTCTAGCCTCTAGCTTTGAGTCCTTGAAAAGAGAGAAGCAGTCA TTGATAATCCAGCTGCATAAACTGAAAAACAGGCATGTAAAGCAACATGGGAGCAGAAATTGTGGAAACCAACTCAGAAGCAGCCGTGATGGCAGATTTG AGAACAAGGATACTGGCTCAGAATCAAAAGAGAAACCCAGCTCTCCATTGGACGGTAATGAAAATGAAGAAAACAGGCCTTCGAGTGATAATAACGGCAG AAATACAGTGAACATGAGGGAGGAAATTGACATTTTGAACCACACCGAACAAACAGACAACTCATCACAGTGGTGGGAGTTCTGGTCATGA
AA sequence Show only first row Show all	>Potri.001G083700.1 pacid=42791683 polypeptide=Potri.001G083700.1.p locus=Potri.001G083700 ID=Potri.001G083700.1.v4.1 annot-version=v4.1 MDPGTHPLSSIQKNAYKRRFTDEQIKFLEFMFESESRPESRVKQQLASELGLEPRQVAIWFQNRRARLKTKQIEKEYSILKASYDVLASSFESLKREKQS LIIQLHKLKNRHVKQHGSRNCGNQLRSSRDGRFENKDTGSESKEKPSSPLDGNENEENRPSSDNNGRNTVNMREEIDILNHTEQTDNSSQWWEFWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G083700 [exp]	0	1	ATHB.3
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	1.00	0.9665
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.014G167100 [exp]	2.82	0.9161
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138900 [exp]	7.93	0.9024	DREB38
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.012G078900 [exp]	9.48	0.8373
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.001G084000 [exp]	13.74	0.8667
					Potri.017G145625 [exp]	14.07	0.8855
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	14.96	0.8772
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	16.73	0.8625
AT4G35030			Protein kinase superfamily pro...		Potri.002G019300 [exp]	18.97	0.8822
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	20.39	0.8822

Compare expression of checked genes

Potri.001G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.