Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41940 603 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 558 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 518 / 4e-180 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 442 / 7e-150 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 130 / 6e-32 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 122 / 5e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 120 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 120 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 115 / 2e-27 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 114 / 5e-27 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146300 [exp] 880 / 0 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 664 / 0 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 659 / 0 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 128 / 3e-31 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 127 / 9e-31 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 125 / 1e-30 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 123 / 2e-29 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.011G135300 [exp] 120 / 5e-29 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.017G023200 [exp] 121 / 8e-29 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033232 [exp] 687 / 0 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 616 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 577 / 0 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 459 / 8e-157 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008839 [exp] 366 / 2e-121 AT3G49350 382 / 3e-128 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 125 / 8e-32 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 130 / 1e-31 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 129 / 3e-31 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10004802 [exp] 127 / 7e-31 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006646 [exp] 126 / 2e-30 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.001G084300.1 pacid=42791577 polypeptide=Potri.001G084300.1.p locus=Potri.001G084300 ID=Potri.001G084300.1.v4.1 annot-version=v4.1 ATGTTGATGCAGCAGAAACCGTTGATGAAAGCCTTAAGGCGAAGCCACACTCCTTCCTCTTCATCTTCTTCGCCGTCAAATTCCTCCTCACCGTCGTCAT CTTCATCGTGGATTCATTTGAGATCAATTTTATTAGTTGTTGCTTCCTCTTCATCGTCGTCTTCATCATCTTCTTCCTCACCAGTTTCCACTAATCGGGG TGGACTTAAATCACCTTGGTCGCGTAGGAGAAGAAAACAAGCGCTTTTACCAAAGCAATGGAAAAGTTTATCTATGCCTGATGGGAAACTGTGTGATGGT GGTGTTAAGTTTCTGAAGAAAGCACGAAGTGGGGGTATTGATCCAAGTCTTAGACCAGAGGTTTGGCCATTTCTCCTTGGAATCTATGATGTGAACAGTT CCAAGGAAGAAAGAGATTGCATCAGAGATCAGAAAAGAAAAGAATATGAGAATCTACGGAAACAGTGCCGGCGGAAGCTCAAACGCAATGACAGGAGTCT TAAGGCCAAGGAAGCTGCTGAAATCAGCAGTGCTGAGGTTAGTGGGGACTTGAGTCAAGTTATGGATTCTCCTAGATTAGAAGATGTTGCTAGTTCCAGG AGGTCACCTTCTGCTGAGCAAGGCAACTTAGCTGCCGAGGATTCGGATTGCCCCGACCAAGCCCCTCAGGACTCTGACTCAATATTGGAAGGAGATGGTG GTAGTGTGGTCACTTATGAAGATGGCTTGGCTGGAGACACAGAGTCAAGTGATTCTGATTCCTCTGAAGAACCTGAAATTGCAGAATCTTTTCTTGCAAC TGAATTTACTGGTGAAAATGATTTTCATCTGCCTTCTTGGGGGAATTCCTCTCCCTCTGAGACAGAAAGCAAGTTGAAATTGCAGAAAGATGAGGATTTT GCCACATGGCAGAGAATCATGCGTGTTGATGCAGTGCGGGCAAATGGTGAATGGATAATGTACTCACCATCTCAGGCTGCAGTACCAGAGATGAAGGCAC GGAGGTTGGCTGAGAGTGTAGGGTTGCAGGACTATGATCACTTGGAGCCAAACAGGATCTTTCATGCTGCTCGCCTTGTTACTATCCTTGAGGCATATGC ACTTTATGATCCTGAGATTGGTTACTGTCAAGGAATGAGCGATTTACTCTCACCCATTATTGCAGTGATGGAGGAGGATTTTTTAGCCTTCTGGTGTTTT GTGGGCTTCATGAAGAAAGCTCGGCATAATTTCCGGCTTGATGAAGTGGGAATCCGGAGGCAATTGGGTATTGTTTCCAAGATAATCAAGTGCAAGGATA GCCATCTCTACAAGCACCTGGAGAAGCTTCAAGCAGAAGACTGCTTCTTTGTGTACAGAATGGTGGTAGTCCTTTTCAGAAGGGAGTTGAACCTTGATCA AACACTCTGCCTCTGGGAGGTGATGTGGGCAGACCAAGCAGCAATACGGGCAGGGATTGCCAGGTCTGCCTGGGGGAGGATGAGGCTAAGGGCCCCTCCT AGTGATGATCTGCTGCTTTATGCAATAGCAGCTTGTGTGCTGCAGAGGAGGAAACTGATCATTGAGAAGTACAGCAGTATGGATGAGATCATGAGAGAGT GCAATAGCATGGCTGGGCAGTTGGATGTCTGGAAGCTTCTCGATGATGCTCATGACTTGGTGGTCAACCTGCACGACAAGATTTAA
AA sequence Show only first row Show all	>Potri.001G084300.1 pacid=42791577 polypeptide=Potri.001G084300.1.p locus=Potri.001G084300 ID=Potri.001G084300.1.v4.1 annot-version=v4.1 MLMQQKPLMKALRRSHTPSSSSSSPSNSSSPSSSSSWIHLRSILLVVASSSSSSSSSSSSPVSTNRGGLKSPWSRRRRKQALLPKQWKSLSMPDGKLCDG GVKFLKKARSGGIDPSLRPEVWPFLLGIYDVNSSKEERDCIRDQKRKEYENLRKQCRRKLKRNDRSLKAKEAAEISSAEVSGDLSQVMDSPRLEDVASSR RSPSAEQGNLAAEDSDCPDQAPQDSDSILEGDGGSVVTYEDGLAGDTESSDSDSSEEPEIAESFLATEFTGENDFHLPSWGNSSPSETESKLKLQKDEDF ATWQRIMRVDAVRANGEWIMYSPSQAAVPEMKARRLAESVGLQDYDHLEPNRIFHAARLVTILEAYALYDPEIGYCQGMSDLLSPIIAVMEEDFLAFWCF VGFMKKARHNFRLDEVGIRRQLGIVSKIIKCKDSHLYKHLEKLQAEDCFFVYRMVVVLFRRELNLDQTLCLWEVMWADQAAIRAGIARSAWGRMRLRAPP SDDLLLYAIAACVLQRRKLIIEKYSSMDEIMRECNSMAGQLDVWKLLDDAHDLVVNLHDKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G084300 [exp]	0	1
AT4G01960			unknown protein		Potri.014G118000 [exp]	31.12	0.7534
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	31.55	0.7769
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	32.17	0.7761
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.008G066400 [exp]	42.08	0.7494	LAX1.1,PtrAUX4
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.016G058600 [exp]	51.17	0.7462
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.007G112400 [exp]	86.61	0.6840
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	89.97	0.7418
AT2G40116			Phosphoinositide-specific phos...		Potri.010G188900 [exp]	97.22	0.7412
AT5G11020			Protein kinase superfamily pro...		Potri.006G260100 [exp]	107.03	0.6874
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G121500 [exp]	110.39	0.7345

Compare expression of checked genes

Potri.001G084300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.