Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24120 932 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 874 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 862 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT1G65730 684 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G27020 669 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 661 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G48370 629 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 626 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G45450 212 / 3e-64 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082400 [exp] 1002 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.011G055224 [exp] 903 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.012G024700 [exp] 758 / 0 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.017G151800 [exp] 664 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 664 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 663 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 660 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G151600 [exp] 654 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 636 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000879 [exp] 992 / 0 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10033231 [exp] 989 / 0 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10022360 [exp] 887 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 845 / 0 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 843 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 837 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 808 / 0 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 801 / 0 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10013323 [exp] 695 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 676 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.001G084400.1 pacid=42790977 polypeptide=Potri.001G084400.1.p locus=Potri.001G084400 ID=Potri.001G084400.1.v4.1 annot-version=v4.1 ATGAAGATTGAAGAAGCAATAGAAAAGAAAGAGATTGAGAGGGAGGAGATGGAGATGGAGATGGAGGTAGATCCACAAGATGAACCAGAAGGGTCAAGGA GACCTCAACCATGGACAAAGCAAATCACAGTAAGAGGGTTCACAGCGAGCATTCTTATTGGAGCCATCTACAGTGTGATAGTTATGAAGCTAAACCTCAC AACTGGGCTGGCTCCAAATTTTAATGTCTCTGCTGCACTTCTTGCTTTTGTATTTGTTCGATCTTGGACAAAAATGCTTCGAAGGGCAGGATTTGTAGTC AAACCCTTTACTCGGCAAGAGAATACGATGATACAAACCTGTGCAGTTGCATGCTATAGCATAGCACATGGAGGTGGATTTGCTTCTTATCTTTTGGGGT TAAACAGGAAGACATATGAGTTGTCAGGGGTGCAGACTGAAGGAAATCCTTCAACTTCTATAAAGGAACCTGGATTTGGTTGGATGTCTGGATACCTGTT CCTAGTTTGCTTTGTTGGTCTTTTTGTGTTGATTCCACTTAGAAAGATTCTGATAGTAGACATGAATTTAACGTTTCCAAGTGGCATGGCAACTGCAGTT CTCATCAATGGTTTCCATAGCAGAGGAAATAAGATGGCAAAGAAACAAGTTCGTGGATTCATGAAGTACTTTTCAATCAGCTTCTTATGGGCATTTTTTC AGTGGTTTTACACTGGGAAAGAAGGATGTGGATTCTCACAGTTCCCTACTTTTGGGTTGAAAGCTTGGAAGCACACATTTTTCTTTGATTTTAACACCAC TTTCATTGGAGCTGGAATGCTTGTTTCTCATCTAGTGAACTTGTCTTTGCTTCTTGGAGCTGTGCTCTCATATGGGGTTATGTGGCCACTTATTGGTCAA CTTAAGGGAGACTGGTTTCCAGCTTCTTTAGAAGAAACTAGCATGAAGAGCTTGTTTGGTTACAAGGTTTTCTTAGCAGTTGCTCTCATCCTAGGAGATG GGCTCTACACTTTCGTTAAGGTAATGGTTTGTACAATCATCAATGTTCATGGCAGAGTACGGGACAAGAAACTCAGTGCAGCAGCTGTGGATCACCAGAA GAAGCACCTTGATGATCAAAGAGTAAATGAAACGTTCCTCAGAGAGACAATACCTTTGTGGGTAGCAGTCATTGGATACGTAGCCTTCTCTATTCTATCC GTAATTGCAGTGCCAATCATATTCCCTCAGCTTAAGTGGTATTATGTCATTGCCGCTTATGTTCTTGCTCCATCTTTAGCATTTTGCAATGCCTATGGAG CTGGTCTAACCGATATAAACATGGCCTATAATTATGGGAAAGTTGCGCTCTTTGTGCTAGCAGCGGTATCCGGGAGAGAGAATGGTGTGGTGGCAGCACT TGCCGGATGTGGCCTTGTTAAATCTGTTCTTTCTGTTGCTTGCATCCTGATGCAGGATTTCAAAACAGCACAAATGACATCCACCTCCCCCAGAGCAATG TTTTTGAGCCAGGTTGTTGGCACAGCAATTGGGTGCATCGCAGCTCCTAGCAGTTTTTTCCTATTTTACAAGGCATTTGATGTTGGAAATCCATATGGAG AATTTAAAGCTCCTTATGCCCTAATTTACAGAAACATGGCAATTCTAGGTGTTGATGGTTTCTCAGCTCTGCCCCAACATTGCTTGCAGCTATGCTATGG TTTCTTTGCTTTTGCTATAGCAATTAACCTGGTGAGAGATTTTTCACCGCAGAAGATCGGACAATGGATGCCACTTCCTATGGTCATGGGTGTTCCATTT CTCATTGGTGCTTCCTTTGCGATAGATATGAGTATTGGAAGTTTGATTGTTTTAATATGGCATAAACGAGACACCAAGAAAGCTGAGTTCATGGTTCCTG CTGTCGCCTCAGGATTAATCTGTGGAGAAGGGCTGTGGACTCTTCCTGAAGCTGTTCTTGCTTTGGCCCAAGTAAAGCCACCTATCTGCATGAAATTTGT AGCTTCCTAG
AA sequence Show only first row Show all	>Potri.001G084400.1 pacid=42790977 polypeptide=Potri.001G084400.1.p locus=Potri.001G084400 ID=Potri.001G084400.1.v4.1 annot-version=v4.1 MKIEEAIEKKEIEREEMEMEMEVDPQDEPEGSRRPQPWTKQITVRGFTASILIGAIYSVIVMKLNLTTGLAPNFNVSAALLAFVFVRSWTKMLRRAGFVV KPFTRQENTMIQTCAVACYSIAHGGGFASYLLGLNRKTYELSGVQTEGNPSTSIKEPGFGWMSGYLFLVCFVGLFVLIPLRKILIVDMNLTFPSGMATAV LINGFHSRGNKMAKKQVRGFMKYFSISFLWAFFQWFYTGKEGCGFSQFPTFGLKAWKHTFFFDFNTTFIGAGMLVSHLVNLSLLLGAVLSYGVMWPLIGQ LKGDWFPASLEETSMKSLFGYKVFLAVALILGDGLYTFVKVMVCTIINVHGRVRDKKLSAAAVDHQKKHLDDQRVNETFLRETIPLWVAVIGYVAFSILS VIAVPIIFPQLKWYYVIAAYVLAPSLAFCNAYGAGLTDINMAYNYGKVALFVLAAVSGRENGVVAALAGCGLVKSVLSVACILMQDFKTAQMTSTSPRAM FLSQVVGTAIGCIAAPSSFFLFYKAFDVGNPYGEFKAPYALIYRNMAILGVDGFSALPQHCLQLCYGFFAFAIAINLVRDFSPQKIGQWMPLPMVMGVPF LIGASFAIDMSIGSLIVLIWHKRDTKKAEFMVPAVASGLICGEGLWTLPEAVLALAQVKPPICMKFVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G084400 [exp]	0	1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	1.41	0.9795
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	3.46	0.9636
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	5.83	0.9656	Pt-CTF2.2
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	6.32	0.9605	Pt-CLPC.2
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	7.07	0.9545
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.001G249200 [exp]	12.00	0.9495
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	12.96	0.9426
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Potri.003G034700 [exp]	13.49	0.9405
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.015G147600 [exp]	14.49	0.9390
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Potri.013G076100 [exp]	15.42	0.9362

Compare expression of checked genes

Potri.001G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.