Plant FIBer expression Database

Potri.001G084500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24090 310 / 2e-105 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017325
[exp]
338 / 2e-116 AT4G24090 303 / 2e-102 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G084500.2 pacid=42790562 polypeptide=Potri.001G084500.2.p locus=Potri.001G084500 ID=Potri.001G084500.2.v4.1 annot-version=v4.1
ATGGCCACAACAACCAACCCCATTAAAATCCTCTCTCCAAACTCCAGACTCCTCCTCACAAAGCCCTTCTGTATCACATCACCAACATGTCCAACACTCT
TCAACAGAGCCACAACTTCACTGCACAAACCTTTACTTGTAATAAAATGCAGCAGCAATAGCTCAGAAGAGATAGGACCAAGTAATGGTAATAATTTGAA
GGATGCATTGTCTGGTATGGTGGACAAGCAAGTGGAGGAACTTTTAAACAGACAAGAGAATAGGGTGTTGCTTGACGGGTTAGAGAAGGCATCGCAAAGA
GTGGAAATGGCTAGAAGAGAACTTGCTGAGATTGAAAGACAGGAACTTGAGGCTAAACAATTGAGGGATTATATTAACCAGCTTGAAAGTAGAGCTTCTG
AGATTGCAGAATGTCAGCAGGAGATCTTAGAGGCAAGAGCCATGGTTGAAGAAGCAGAACGTTCGCTGTCACTTAATAATGATGGGGATGCTTTAGAAAG
CAAGGAGATTAGCAGAGATCAAGAAAGACTGGAGTCCATAAAGGCAGGTTTTGTATCTGCACTTGTCGGCACCCTTGCTGGGCTCCCCATTTCTCTCACT
CAAGTGACCAGCAATGCTCAGCTAATACTTCCGTCCACAATCACCTTCATTAGCTGTGCATTATTCGGCTTAACCTTTCGATATGCAGTAAGAAGAGACT
TGGACAATTTTCAGCTGAAGACGGGGACAGCTGCAGCTTTTGGCATTGTGAAAGGTCTTGCTACACTAGCTGGAGGACAGCCATTGGAGCTCGATCCTGA
AAGCTTCTTGTCGCATGCCTTTAATGGTGCAAAGTATGTATCAGAGAATCTTTTGATCTTTGCTTTTGCTGCTGTTAGTCTGGATTTCTGCTTTAAGATG
GGGCTTTTAAGTCCCTTTCCTATGAAAAGGTCAGCTTCAAGGACTAACATAGAATGA
AA sequence
>Potri.001G084500.2 pacid=42790562 polypeptide=Potri.001G084500.2.p locus=Potri.001G084500 ID=Potri.001G084500.2.v4.1 annot-version=v4.1
MATTTNPIKILSPNSRLLLTKPFCITSPTCPTLFNRATTSLHKPLLVIKCSSNSSEEIGPSNGNNLKDALSGMVDKQVEELLNRQENRVLLDGLEKASQR
VEMARRELAEIERQELEAKQLRDYINQLESRASEIAECQQEILEARAMVEEAERSLSLNNDGDALESKEISRDQERLESIKAGFVSALVGTLAGLPISLT
QVTSNAQLILPSTITFISCALFGLTFRYAVRRDLDNFQLKTGTAAAFGIVKGLATLAGGQPLELDPESFLSHAFNGAKYVSENLLIFAFAAVSLDFCFKM
GLLSPFPMKRSASRTNIE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24090 unknown protein Potri.001G084500
[exp]
0 1
AT1G49380 cytochrome c biogenesis protei... Potri.009G111692
[exp]
2.00 0.9839
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.001G249800
[exp]
3.46 0.9701
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.005G083200
[exp]
4.58 0.9696
AT3G23070 ATCFM3A CRM family member 3A (.1) Potri.010G077100
[exp]
4.58 0.9718
AT3G27180 S-adenosyl-L-methionine-depend... Potri.001G331900
[exp]
5.47 0.9655
AT3G20930 RNA-binding (RRM/RBD/RNP motif... Potri.008G022200
[exp]
5.65 0.9676
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.013G075400
[exp]
7.07 0.9706
AT5G63420 Trihelix EMB2746 embryo defective 2746, RNA-met... Potri.012G095800
[exp]
8.36 0.9620
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.014G050300
[exp]
8.48 0.9706
AT5G42310 Pentatricopeptide repeat (PPR-... Potri.002G010900
[exp]
9.27 0.9475

Potri.001G084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.