Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10730 905 / 0 Protein kinase superfamily protein (.1) AT4G24100 899 / 0 Protein kinase superfamily protein (.1) AT5G14720 526 / 1e-178 Protein kinase superfamily protein (.1) AT1G79640 518 / 2e-175 Protein kinase superfamily protein (.1.2) AT1G70430 444 / 7e-148 Protein kinase superfamily protein (.1) AT4G14480 320 / 2e-101 Protein kinase superfamily protein (.1) AT1G23700 293 / 2e-91 Protein kinase superfamily protein (.1) AT3G15220 227 / 2e-64 Protein kinase superfamily protein (.1) AT1G53165 223 / 5e-63 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 212 / 3e-58 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146000 [exp] 1293 / 0 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 528 / 3e-179 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 516 / 1e-174 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G037900 [exp] 514 / 5e-174 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G163800 [exp] 333 / 1e-105 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 260 / 7e-79 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 260 / 5e-78 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 223 / 1e-62 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 219 / 9e-62 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033230 [exp] 1038 / 0 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 1010 / 0 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 1004 / 0 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 996 / 0 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10014542 [exp] 518 / 2e-174 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 503 / 7e-170 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 501 / 5e-169 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 496 / 3e-166 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021882 [exp] 315 / 2e-99 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 211 / 9e-63 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G084700.3 pacid=42789772 polypeptide=Potri.001G084700.3.p locus=Potri.001G084700 ID=Potri.001G084700.3.v4.1 annot-version=v4.1 ATGGGGAGGATGGGAAAGATGTACACGGTGAATCCAAATGATTATAAGTTACTAGAAGAAGTAGGATATGGAGCGAGTGCTGTTGTTTATAGAGCGATCT ATATTCCGTTTAATGAAGTAGTCGCTATTAAGTGTTTGGATCTCGATCGTTGCAATAGCAATCTGGATGATATAAGGAGGGAAGCTCAAACCATGAGTTT GATAGATCATCCAAATGTTATTAGAGCTTATTGTTCATTTGTTGTTGACCAAAATTTATGGGTGGTCATGCCGTTCATGGCCGAGGGCTCTTGTTTGCAC CTCATGAAGATAGCATATCAAGAAGGATTTGAGGAGTCTGCTATTGGTTCTATTCTGAAAGAAACGCTTAAGGCTTTGGAGTACCTGCATCGACAAGGGC ATATTCATCGGGATGTTAAAGCTGGAAACATTCTACTGGATACCAATGGGATTGTAAAGCTTGCTGACTTTGGTGTTTCAGCTTGCATGTTTGATACAGG TGATCGACAGCGTTCCAGAAATACTTTTGTGGGGACTCCATGCTGGATGGCACCTGAGGTTTTGCAGCCAGGAAGTGGATATAATTCCAAGGCTGATATT TGGTCATTTGGTATAACGGCACTTGAGCTGGCCCATGGCCATGCACCTTTTTCAAAATATCCTCCAATGAAGGTTCTTCTCATGACCATACAGAATGCTC CTCCTGGTCTTGATTATGATCGTGATAAAAAATTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTTGTGAAAGATCAAACAAAGAGGCCAACTGC TGAGAAGTTAATAAAACATTCTTTTTTTAAGAATGCAAAGCCTCCAGAGCTTTCTGTGAAGAAGTTGTTTGCAGACTTGCCCCCACTTTGGAATCGTGTG AAAGCTATTCAGCTCAAAGATGCTGCACAGCTGGCTCTAAAGAAAATGCCTTCTGCAGAACAAGAAGCATTGTCACAGAGTGAGTATCAACGGGGAGTTA GTGCCTGGAATTTTGACCTTGAGGATTTGAAAGCCCAAGCATCACTAGTGCGAGATGATGATGATATACCAGAGACGAGGGAAGAAGATGAAAGCATTAA ATTTGGTGGTGGTAAGGCTGCTATTGGTTCCCAATCTAGTTCAGTGAAAGTAAATTCAAATAGTGAAATACAGCTGGTTGAGTACAGCAGACAATTAAGT GGGGGTGAATTGCCTCAGGCAGATAACTTCATTAGAAAGGGCAAGTTACCAGAAAGTGACTTGCTGGAAACCAGTAGCCTTGAAAAAGTTGGGTGGAAGA GAAATGGATCAAGCTCTGAAGCAAAGGCCTCGACTTCAGAAAGCGTCATGGCACAGGCCAAGGCCAAAACAGTGAAAAGTCGCCAAACCCATAGTGGGCC CCTCATGCCTGGTACTGTATTTTCTCATTCATTATCAGAAAGGGGGCGCACTTCTGAAAGGTTTGAGAATGAAATTCATCCAACAGCTGAAAGAGCCACC CGTGAAGTTCGGAAAGCTCCAAGCTTTAGTGGTCCTCTAATGCTTCCAAATCGAGCTTCAGCGAACAGTTTATCAGCTCCCATAAAATCTTCAGGAGGAT TTAGAGATTCTTTGGATGAAAAGTCGAAGACAAATCTGGTCCAAATAAAGGGGAGGTTCTCAGTTACATCAGAAAATTTAGATCTTGTAAAGGATATTCC ATTAAGTACAGTTCCACGACGGTCTTCACAATCACCACTGAGAAAGTCTGCTAGTGTTGGTGAGTGGATGTTTGAGCCAAAGCAAATGCCTGTGAATCAG CCTCCAAAAGAGGTTAGCAACAATAGTGTCCATGCTCTACTCTTCCCTCATCTTCAGAATCTTTTTCAGCAGACCTCAATTCAACAGGATATTATTATGA GTTTATTGAATAGCTTGCAGCCAGCTGAGGCCATAGAAGCTGCTCAAAATGGGAAGTTGCCGCCATTGCCTCATGGTTCAGAGAACAATGGAAGTGTCGA AGCAGCATCCTCTGAGAGGGAGAAATCATTATTGATCAAGATCACTGAGCTTCAAAATAGGATGGTGAATTTGACCGATGAACTGAATGCTGAAAAGCTA AAATATGAGCAATTGCAACAGCAGCTGAAAGCCATATCTGGTAGGGAAGAGAATGGGGAAAGGAGCGAAGTGGATGCCTGA
AA sequence Show only first row Show all	>Potri.001G084700.3 pacid=42789772 polypeptide=Potri.001G084700.3.p locus=Potri.001G084700 ID=Potri.001G084700.3.v4.1 annot-version=v4.1 MGRMGKMYTVNPNDYKLLEEVGYGASAVVYRAIYIPFNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNVIRAYCSFVVDQNLWVVMPFMAEGSCLH LMKIAYQEGFEESAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDTNGIVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADI WSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLIKHSFFKNAKPPELSVKKLFADLPPLWNRV KAIQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDLEDLKAQASLVRDDDDIPETREEDESIKFGGGKAAIGSQSSSVKVNSNSEIQLVEYSRQLS GGELPQADNFIRKGKLPESDLLETSSLEKVGWKRNGSSSEAKASTSESVMAQAKAKTVKSRQTHSGPLMPGTVFSHSLSERGRTSERFENEIHPTAERAT REVRKAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSLDEKSKTNLVQIKGRFSVTSENLDLVKDIPLSTVPRRSSQSPLRKSASVGEWMFEPKQMPVNQ PPKEVSNNSVHALLFPHLQNLFQQTSIQQDIIMSLLNSLQPAEAIEAAQNGKLPPLPHGSENNGSVEAASSEREKSLLIKITELQNRMVNLTDELNAEKL KYEQLQQQLKAISGREENGERSEVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10730			Protein kinase superfamily pro...		Potri.001G084700 [exp]	0	1
AT4G10730			Protein kinase superfamily pro...		Potri.003G146000 [exp]	1.00	0.8640
AT2G24960			unknown protein		Potri.013G025200 [exp]	6.48	0.7384
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	12.04	0.7098
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	13.49	0.6881
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	22.18	0.7232
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	22.31	0.7034
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	23.23	0.6605
AT1G74770			zinc ion binding (.1)		Potri.015G066600 [exp]	23.43	0.7276
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	24.53	0.6876	Pt-PP1.5
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	26.07	0.6975

Compare expression of checked genes

Potri.001G084700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.