Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10760 627 / 0 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) AT4G09980 122 / 2e-28 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT1G19340 52 / 1e-06 Methyltransferase MT-A70 family protein (.1) AT1G37010 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144400 [exp] 137 / 4e-33 AT4G09980 874 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.015G147200 [exp] 137 / 4e-33 AT4G09980 899 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010405 [exp] 706 / 0 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10012141 [exp] 689 / 0 AT4G10760 807 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10010408 [exp] 496 / 3e-172 AT4G10760 447 / 2e-154 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10014971 [exp] 138 / 4e-33 AT4G09980 927 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10038853 [exp] 137 / 5e-33 AT4G09980 929 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05063 [poplar] [flax] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Potri.001G085200.1 pacid=42791364 polypeptide=Potri.001G085200.1.p locus=Potri.001G085200 ID=Potri.001G085200.1.v4.1 annot-version=v4.1 ATGGAGATTCATCCAAACAAGAACCAAAACAACAATGGTGAAGACAAAACAGTAGCAACAATAAAAAACCTACGTTCCGGACTAGAATCAAGAATAGAAA CCCAACATAAAACCCAACTTGACTTATTAGCTTCTCTTCAAGATTTAGTCCCCAACATTGTATCCTCTCTTGACCTGTCCTTACAAATTGTCTCTTCTTT CAATAACAAACCCTTCACCCCAACACCACCACTACCAGCTTCAACATCAAGAGCCCACCTTGAAATTGGATCAAATTCAAGGAATCCCAATGACCCACGA GCTAATATTGACTCAAGACCTGAAATTTTGGGTGAAAGTTCGAAACTTGAGAGAAAAGATGGAAACTTTGACGGTGATGGGGCTGAGAGTGGGAGTCCAT TGGCTGTTGTGAGAGTAATGGTGGCTGAATGTTTGCTTCAAAGGGTGCCTTTTAATCCAATTGATTCGTCAACTGTTTTGAGGAAGTTGGAGAATGATCA GAATGCGACCGAGGCCGAGAAGGCGGCGATTAGGGAGGTTGGAGGTGAGTCTGGGGCGATTCTGGCGGTGGAAATGGCTTTGAGGTCAATGGCGGAAGAG AATCGTGGGATTGAGCTTGAGGAGTTTGTGGTAAGCGGCAAGTCTAGAGTTATGGTATTAAATATTGATAGAAACCGGTTAGTTAAAGAATTGCCTGAAA GTGCACAATATACACAGAATTTAGAATTGTCAGGTTCTAGTGATTTTAATCAGAATCAGAGTAGTGGGATTGGTAATAATGTTAATAGCAATGGCGGGGT TGATGTGAATGGTAATGGGGTTTATGGGATTGGAGGGCCGGTTGTGATGCAAAGGCCATTGATGGGGGACATGTGGATGGGTGGCGGTGGGGATATGTGG CCTAGGGGAGGGATGATGGGACCTCGAGGGATGATGATGGGGCCGCGAGGGATGATGCAGAGGCCGCCTATGCCTTTGCCAATGCAATCGCAGCAGCAAA AGCAAAGGAGTGAAGAGGATGAAATGAAGGATTTGGAGGCTTTGCTGAATAAGAAGTCATTTAGGGAAATGCAGAAATCAAAGACTGGTGAGGAGCTTTT GGACCTCATTCATCGACCTACTGCGAGAGAAACTGCCGTGGCTGCTAAGTTCAAAACCAAAGGTGGTTCTCAGCTAAAGGAGTATTGTTCGGCTCTAACA AAAGAGGACTGTAGACGTCAATGTGGTTCCTTTATTGCATGTGAGAAGGTTCATTTTCGTCGAATTATTGCTCCTCATACTGACGTGAGTCAAGGGGACT GTTCTTTTCTTGACACTTGCCGCCACATGAAGACTTGCAAGTATGTCCATTATGAGCTTGACCCAACACCGGATGTGTCTCCTATGGCAATGGGTGCTGC AGCACTTCCTCCCCCCAAAGCTTTAAAGCCCCAGCGTGCTGAATATTGTTCAGAAGTAGAACTTGGCGAACCGCAATGGATTAATTGTGATATTCGTAAT TTCAAAATGGAGATTTTAGGTCAATTTGGAGTTATCATGGCTGATCCACCATGGGACATTCATATGGAACTGCCTTATGGAACAATGGCTGATGATGAAA TGCGCAACCTCAATGTCCCTGTGTTGCAAACTGATGGTCTAATTTTTCTTTGGGTTACTGGACGTGCTATGGAGCTTGGACGTGAATGTTTAGAACTTTG GGGGTACAAGCGTGTTGAAGAGATTATTTGGGTAAAGACCAATCAACTTCAGCGAATAATTAGAACAGGTAGAACAGGGCATTGGCTTAACCACAGTAAG GAACATTGCCTTGTTGGAATAAAGGGAAATCCAGAAGTAAACAGGAACATTGACACTGACGTCATAGTTGCTGAGGTTCGAGAGACAAGTCGTAAGCCAG ACGAGATGTACCCTCTGCTGGAGAGGATAAGTCCCAGGACAAGGAAGCTGGAGCTGTTTGCTCGCATGCACAACACTCAAGCAGGCTGGATGTCCCTTGG CAATCAGTTGGAAGGAGTGCGATTGGTTGATGAGGGTCTGCGAGCAAGATTTAAGGCTGCCTACCCAGACGTTGTGGTGCAGCCCTCATCTCCTCCCCGG GCTTCCGCAATGGAAATAGACTCCACTGCTTCTCAAATGAGAAGTCCTTTTTCAGTGACAGAATCCAAGTCTATGGCCACACAGTTTGCAGACCGTGCAG CTCCAGAAACAGTCTATACTTCTGAAGAAAAGCCGATGGCATTAGATGCTGTTATGGCTGGCTGA
AA sequence Show only first row Show all	>Potri.001G085200.1 pacid=42791364 polypeptide=Potri.001G085200.1.p locus=Potri.001G085200 ID=Potri.001G085200.1.v4.1 annot-version=v4.1 MEIHPNKNQNNNGEDKTVATIKNLRSGLESRIETQHKTQLDLLASLQDLVPNIVSSLDLSLQIVSSFNNKPFTPTPPLPASTSRAHLEIGSNSRNPNDPR ANIDSRPEILGESSKLERKDGNFDGDGAESGSPLAVVRVMVAECLLQRVPFNPIDSSTVLRKLENDQNATEAEKAAIREVGGESGAILAVEMALRSMAEE NRGIELEEFVVSGKSRVMVLNIDRNRLVKELPESAQYTQNLELSGSSDFNQNQSSGIGNNVNSNGGVDVNGNGVYGIGGPVVMQRPLMGDMWMGGGGDMW PRGGMMGPRGMMMGPRGMMQRPPMPLPMQSQQQKQRSEEDEMKDLEALLNKKSFREMQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSALT KEDCRRQCGSFIACEKVHFRRIIAPHTDVSQGDCSFLDTCRHMKTCKYVHYELDPTPDVSPMAMGAAALPPPKALKPQRAEYCSEVELGEPQWINCDIRN FKMEILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPVLQTDGLIFLWVTGRAMELGRECLELWGYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSK EHCLVGIKGNPEVNRNIDTDVIVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTQAGWMSLGNQLEGVRLVDEGLRARFKAAYPDVVVQPSSPPR ASAMEIDSTASQMRSPFSVTESKSMATQFADRAAPETVYTSEEKPMALDAVMAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	2.00	0.9151
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	3.74	0.9112
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	4.89	0.8878
AT3G22980			Ribosomal protein S5/Elongatio...		Potri.009G152500 [exp]	4.89	0.8815
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	5.19	0.9109
AT1G14900		HMGA	high mobility group A (.1)		Potri.012G048500 [exp]	5.29	0.8892
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	5.47	0.8830
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	7.74	0.9065
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	8.12	0.8823
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	8.66	0.8997

Compare expression of checked genes

Potri.001G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.