Plant FIBer expression Database

Potri.001G085600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10790 519 / 0 UBX domain-containing protein (.1)
AT4G23040 57 / 2e-08 Ubiquitin-like superfamily protein (.1)
AT4G11740 52 / 5e-07 SAY1 Ubiquitin-like superfamily protein (.1)
AT4G00752 50 / 3e-06 UBX domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G145200
[exp]
656 / 0 AT4G10790 552 / 0.0 UBX domain-containing protein (.1)
Potri.015G080200
[exp]
134 / 7e-35 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1)
Potri.014G075600
[exp]
59 / 5e-09 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1)
Potri.001G109500
[exp]
52 / 5e-07 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1)
Potri.003G122300
[exp]
52 / 5e-07 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003214
[exp]
386 / 7e-131 AT4G10790 525 / 0.0 UBX domain-containing protein (.1)
Lus10017317
[exp]
239 / 1e-74 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1)
Lus10027684
[exp]
120 / 3e-30 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1)
Lus10039951
[exp]
96 / 1e-21 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1)
Lus10029591
[exp]
54 / 1e-07 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1)
Lus10006321
[exp]
53 / 4e-07 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1)
Lus10036564
[exp]
52 / 1e-06 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1)
Lus10041365
[exp]
47 / 3e-05 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00789 UBX UBX domain
CL0214 UBA PF14555 UBA_4 UBA-like domain
Representative CDS sequence
>Potri.001G085600.1 pacid=42790110 polypeptide=Potri.001G085600.1.p locus=Potri.001G085600 ID=Potri.001G085600.1.v4.1 annot-version=v4.1
ATGGTTGATGTAGCAGATAAATTAGCCTGTTTTCGAGCAATTACAGGCCTTGAAGATTCCGATTTATGCACCGAAATCCTCCAAGCCCATAATTGGGACC
TCGAACTTGCCATCTCCTCTTTCACCTCCAACCACTCCGATAATCACCCCTTTTCTTCCTCTTACACCGCCACCGACACCACTGCCACCGCCGTCGACCC
CTCAAATGCGACCATTCACCGCTCCGATTCCACCTCCATCGTTCCCGCGGGCGCCCCTCCTCCTGGTTTGGCCTGGAAAATTGTTACTTTACCTATATCA
GTCATTTCTGGTAGTTTAGGGTTAATTTCTGGTGCAGTGGGGTTTGGATTATGGGCTGCTGGTGGTGTCTTGTCGTATTCGTTAGGTTTTATTGGGTTGG
GATCGAATTCTGGCCGCGGTGGGGATTCGTCGGCCCAATTGGTAACTGTTTCTGCTGCGTCTAGAGAAGCGATGGAGTTTGTTGCTCAATTTGAGAGGGA
TTATGGTTCTGGTTCTTCTACTAGGCCGAATTTTGTCAGTGAAGGGTTTATGGATGCGTTGACGAGGTCGAGGAATACTTTTAAGTTGTTGTTTGTGTAT
TTGCATTCGCCGGATCATCTTGATACGCCCGCGTTTTGTGAGGGGACATTGTGTTCGGAGGTTCTTAGTGCTTTTGTTAATGAGAATTTTGTTGCGTGGG
GTGGGAGTATTAGAGGGAGTGAAGGGTTTAAGATGAGTAATAGTTTGAAGGCTTCGAGGTTTCCATTTTGTGCTGTTGTTATGTCTTCTACGAATCAGAG
GATTGTGTTGCTTCAACACGTTGAGGGTCCGAAATCTCCTGAAGAAATGCTCGTGATACTACAGAGAGTTCTTGAACAAAGTGCCCCTGTTCTTGTGACA
GCAAGACTTGAAGCAGAAGAGAGAACAACCAACATGCGTTTGAGGGAGGAGCAAGATGCTGCATACAGAGCGGCACTTGAAGCTGATCAGGCCAGAGAAC
GACAACAGAGAGAAGAACAAGAACGTCTAGAAAGGGAAGCTGCTGAGGCAGAGAGAAAGCGCAGGGAGGAAGAAGAGGCTCGGGATAGAGCAGCAAGTGA
GGCTGCTGAAAACGAGGCTGCTCTGGCAAGAATGCGGCAAGAGAAAGCCCTTTCACTTGGTGCCGAACCTGAAAAAGGACCTGATGTCACACAAGTTTTG
GTTCGATTCCCAACTGGAGAACGCAAAGAGAGGAGGTTCCACTGTGCAGCCACTATCCAGTCTCTATATGATTATGTTGATTCTTTGGGTTCCTTAAATG
TCGAGAATTACAGTCTTGTCTCGAACTTTCCCCGAGTTGTCTATGGTACAGATAAGGTCTCTCTATCTCTGAAAGAAGCAGGTTTGCACCCTCAAGCCAG
CCTTTTTGTGGAGCTGAACTAG
AA sequence
>Potri.001G085600.1 pacid=42790110 polypeptide=Potri.001G085600.1.p locus=Potri.001G085600 ID=Potri.001G085600.1.v4.1 annot-version=v4.1
MVDVADKLACFRAITGLEDSDLCTEILQAHNWDLELAISSFTSNHSDNHPFSSSYTATDTTATAVDPSNATIHRSDSTSIVPAGAPPPGLAWKIVTLPIS
VISGSLGLISGAVGFGLWAAGGVLSYSLGFIGLGSNSGRGGDSSAQLVTVSAASREAMEFVAQFERDYGSGSSTRPNFVSEGFMDALTRSRNTFKLLFVY
LHSPDHLDTPAFCEGTLCSEVLSAFVNENFVAWGGSIRGSEGFKMSNSLKASRFPFCAVVMSSTNQRIVLLQHVEGPKSPEEMLVILQRVLEQSAPVLVT
ARLEAEERTTNMRLREEQDAAYRAALEADQARERQQREEQERLEREAAEAERKRREEEEARDRAASEAAENEAALARMRQEKALSLGAEPEKGPDVTQVL
VRFPTGERKERRFHCAATIQSLYDYVDSLGSLNVENYSLVSNFPRVVYGTDKVSLSLKEAGLHPQASLFVELN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10790 UBX domain-containing protein ... Potri.001G085600
[exp]
0 1
Potri.005G009001
[exp]
1.73 0.9410
AT1G36280 L-Aspartase-like family protei... Potri.010G193400
[exp]
2.64 0.9227
AT2G32840 proline-rich family protein (.... Potri.001G229800
[exp]
3.46 0.9317
AT1G09710 MYB Homeodomain-like superfamily p... Potri.002G106500
[exp]
4.47 0.9259
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Potri.009G041600
[exp]
4.47 0.9307
AT1G07030 Mitochondrial substrate carrie... Potri.009G077600
[exp]
5.19 0.9212
AT1G24040 Acyl-CoA N-acyltransferases (N... Potri.010G095800
[exp]
5.83 0.9114
AT4G27540 PRA1.H prenylated RAB acceptor 1.H (.... Potri.011G116200
[exp]
6.00 0.9185
AT3G61370 Protein of unknown function (D... Potri.016G069200
[exp]
6.00 0.9251
AT4G35260 IDH-I, IDH1 isocitrate dehydrogenase I, is... Potri.004G204300
[exp]
6.48 0.9175 IDH1.1

Potri.001G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.