Plant FIBer expression Database

Potri.001G085800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63830 208 / 6e-66 HIT-type Zinc finger family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G145100
[exp]
321 / 5e-110 AT5G63830 396 / 3e-136 HIT-type Zinc finger family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003211
[exp]
239 / 5e-78 AT5G63830 410 / 5e-142 HIT-type Zinc finger family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G085800.2 pacid=42791180 polypeptide=Potri.001G085800.2.p locus=Potri.001G085800 ID=Potri.001G085800.2.v4.1 annot-version=v4.1
ATGATGGTGCAGGGTACCAACCTAGTGAGATTCTTCCTGTCCCTGATACCTCCTGTCAGGAAACTTGTTTCTAGAGAGCCATCACCCTTCTTAGCCTATC
ACTTGGGTGACATTATATATAGCTACTGCTTCACACAACGCCTCTACAATGGAGATTGGCAATCAGATGCCATAGGGTCAGAAACAGCGGTATTGAGTGT
CTCCTCTGTCTTAGGTCAAGCTGGGCAGCCAGAAACCGTGCTGGAAGCTCTTTCATATTGTTTGGAGCGAACTTGCTCTCCTGAGTATAGACACATGGGT
AGACTGCAATTTGGACTGGGTCTCGTCGATGATGTAATACACGTGATGTCACCTGGTGGCCATGCTTTAATCTGCTTGCTCAGTGATCTACAGAAGATGG
TTCAGGCTGGAGAAAAGGAGCTGAAAGCTGAGGAAACGAGAAAGGCAGAGTCAGAAATCCGGAGTAAGCTGAAACTTGCCGAGAGGAAGGTCTATTTCAT
AATGTGTTGGGTGCATGAGCAGCCAGGGGAAGCCTGGTCCTCGTTAGCCGCCATCGTAAGGGCAGAAAAAAGCTCAGGCATGGATTATAGAGGAGGTAAA
AATCTTCCAGCAGCAAAAAAATAA
AA sequence
>Potri.001G085800.2 pacid=42791180 polypeptide=Potri.001G085800.2.p locus=Potri.001G085800 ID=Potri.001G085800.2.v4.1 annot-version=v4.1
MMVQGTNLVRFFLSLIPPVRKLVSREPSPFLAYHLGDIIYSYCFTQRLYNGDWQSDAIGSETAVLSVSSVLGQAGQPETVLEALSYCLERTCSPEYRHMG
RLQFGLGLVDDVIHVMSPGGHALICLLSDLQKMVQAGEKELKAEETRKAESEIRSKLKLAERKVYFIMCWVHEQPGEAWSSLAAIVRAEKSSGMDYRGGK
NLPAAKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63830 HIT-type Zinc finger family pr... Potri.001G085800
[exp]
0 1
AT5G20890 TCP-1/cpn60 chaperonin family ... Potri.006G128600
[exp]
5.83 0.9487
AT5G14890 NHL domain-containing protein ... Potri.003G101300
[exp]
6.78 0.9289
AT3G29590 AT5MAT HXXXD-type acyl-transferase fa... Potri.009G019700
[exp]
10.00 0.9462
AT4G13640 GARP UNE16 unfertilized embryo sac 16, Ho... Potri.006G081001
[exp]
10.09 0.9623
AT1G27461 unknown protein Potri.002G117700
[exp]
11.13 0.9360
AT5G01030 Protein of unknown function (D... Potri.016G105500
[exp]
11.13 0.9603
AT5G66110 HIPP27 heavy metal associated isopren... Potri.005G110400
[exp]
13.63 0.9624
AT1G70780 unknown protein Potri.010G110800
[exp]
15.49 0.9238
AT5G22470 NAD+ ADP-ribosyltransferases;N... Potri.004G184100
[exp]
16.12 0.9584
AT5G03990 unknown protein Potri.006G262800
[exp]
20.66 0.9545

Potri.001G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.