Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00910 509 / 3e-178 Aluminium activated malate transporter family protein (.1) AT1G08440 344 / 3e-113 Aluminium activated malate transporter family protein (.1) AT2G27240 323 / 4e-105 Aluminium activated malate transporter family protein (.1) AT3G11680 318 / 2e-103 Aluminium activated malate transporter family protein (.1) AT4G17970 319 / 6e-103 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT1G08430 313 / 1e-101 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT5G46610 310 / 2e-99 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 307 / 2e-98 Aluminium activated malate transporter family protein (.1) AT1G18420 249 / 1e-75 Aluminium activated malate transporter family protein (.1) AT3G18440 242 / 6e-73 ATALMT9 aluminum-activated malate transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145000 [exp] 824 / 0 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 534 / 0 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.014G101200 [exp] 395 / 4e-134 AT4G00910 374 / 9e-126 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 359 / 2e-119 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 358 / 6e-119 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 357 / 1e-118 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 357 / 2e-118 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 343 / 3e-113 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 342 / 9e-113 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033223 [exp] 565 / 0 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 564 / 0 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 343 / 2e-113 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 339 / 2e-111 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 307 / 1e-99 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 306 / 2e-98 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 299 / 2e-95 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 296 / 2e-94 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10001846 [exp] 288 / 4e-92 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10022030 [exp] 214 / 5e-64 AT5G46600 237 / 2e-72 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.001G085900.1 pacid=42787966 polypeptide=Potri.001G085900.1.p locus=Potri.001G085900 ID=Potri.001G085900.1.v4.1 annot-version=v4.1 ATGGCTCATCAGGAGAAGGCAACAAGTGAAGTGGAGTGGAGAATAACTTTGGGAGATGGGTCATCAAAGAGTTTGGTCCCAGATGCAGGGCCTGTCAGCA GAATATGGATAGGGCTAAAGGGTTTGATAGCAGGGTTGGTTTTGAAAGTATGGAAGTTTTTAAAGAGAGCATGGGATATAGGGGTAGATGACCCTAGAAA AGTGATCCATTGTCTAAAAGTAGGAATGGCACTCACTGTTGTCTCACTCTTTTACTTCATGAGACCTCTGTATAAAGGTGTGGGTGGAAATGCTATGTGG GCTATAATGACAGTTGTGGTAGTCTTTGAAAATACTGTAGGTGCAACGATATGCAAAAGTTTGAATAGAGTGTTTGGAACAACTCTTGCTGGCTTTCTTG CCTTTGGTGTCCATTGGGTGGCTAGTCAGTCAGGACAGGAATTTGAGCCCTTAATCACTGGAGCTTCAGTTTTCTTGTTAGCTTCTACTGCAACCTTCTC TAGATTTATTCCCTCAGTGAAAGCTCGGTTTGATTATGGTGCCATGATCTTTATCCTCACTTTCAGTCTTGTCACTGTGTCTGGTTATCGAGTGGATAAA TTGTTTGATATGGCTCATCAAAGAATATCTACCATTATCATCGGAACTTCTTTATGCATTTTTGTTACCATGTTTATTTGCCCCATCTGGGCTGGGGAGG AGCTGCATATTCTTATCAGCCGCAACATGGACAAACTTGCCAATTCTTTAGATGGTTGTGTAGATGAGCATTTCAATTACAATGGTGAACTTAAAGACAG CGATAAACAACCTGACAAGAAATTGCTTGGTTACAAATGTGTGCTCAGTTCCAAGGCCACAGAGGAATCCATGGCCACATTTGCTAGATGGGAGCCTGCG CATGGCCGCTTCAACTTCAAACATCCATGGCAACAATACCTTAAAATTGGTGCATCAATGCGCAGCTGCGCTTACTGTGTTGAGGCTCTTAACAGGTGCA TTGATTCAGAAAATCAGGCCTCTGAATTCACAAAGAAGCATCTGAGCAATATTTGCCTGAAAGTGAGCTCCAACTCTTCCAGTGTTATGAAAGAGGTAGC AAAAACTATCAAGACAATGAAAAGATCACCCTCCATAGATTTCTTAGTTGAAGAAATGAGGAGTACAGTGCAAGATCTGCAAAATGAATTAAATTTTCTT CCTAAATTGCTGAGTCCACCAGAAGTATTACATCCTGAAAGCAAGGAAACAGAAGAAACAACCTCCACAACCCATCTCCTGGTAGTTATTCCAGTGGTAA CTTTTGCTTCGTTGATGATAGAAATCTCTTCAAGGATCCAAGCTATTGTAGAAACGGTGGAAGAACTAGCTGAGTTAGCTGAATTCAAGGGTGAAGTTCA GGACAAGGACAAACAAAATCAACCGAATACTAATAGAATTGTAGCAAGTCAACTAAATGATGATCAGCAAACTTTGAAGGCTCTTGAAAGGGTCTGA
AA sequence Show only first row Show all	>Potri.001G085900.1 pacid=42787966 polypeptide=Potri.001G085900.1.p locus=Potri.001G085900 ID=Potri.001G085900.1.v4.1 annot-version=v4.1 MAHQEKATSEVEWRITLGDGSSKSLVPDAGPVSRIWIGLKGLIAGLVLKVWKFLKRAWDIGVDDPRKVIHCLKVGMALTVVSLFYFMRPLYKGVGGNAMW AIMTVVVVFENTVGATICKSLNRVFGTTLAGFLAFGVHWVASQSGQEFEPLITGASVFLLASTATFSRFIPSVKARFDYGAMIFILTFSLVTVSGYRVDK LFDMAHQRISTIIIGTSLCIFVTMFICPIWAGEELHILISRNMDKLANSLDGCVDEHFNYNGELKDSDKQPDKKLLGYKCVLSSKATEESMATFARWEPA HGRFNFKHPWQQYLKIGASMRSCAYCVEALNRCIDSENQASEFTKKHLSNICLKVSSNSSSVMKEVAKTIKTMKRSPSIDFLVEEMRSTVQDLQNELNFL PKLLSPPEVLHPESKETEETTSTTHLLVVIPVVTFASLMIEISSRIQAIVETVEELAELAEFKGEVQDKDKQNQPNTNRIVASQLNDDQQTLKALERV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125700 [exp]	3.16	0.9816
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	3.87	0.9895
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.003G088800 [exp]	5.00	0.9723
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	5.29	0.9891	Pt-NRAMP1.4
AT1G12100			Bifunctional inhibitor/lipid-t...		Potri.001G121800 [exp]	6.48	0.9853
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	6.70	0.9868
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	6.70	0.9884	Pt-ZIP6.4
AT1G16310			Cation efflux family protein (...		Potri.008G083600 [exp]	7.61	0.9668	PtrMTP9
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	8.24	0.9873
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.003G157001 [exp]	9.05	0.9184

Compare expression of checked genes

Potri.001G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.