Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27230 248 / 6e-72 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 232 / 3e-67 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT1G06150 192 / 3e-51 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 187 / 7e-50 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT5G24352 78 / 2e-17 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 69 / 5e-12 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G53900 64 / 2e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 60 / 3e-09 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT2G24260 45 / 0.0002 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT1G27740 44 / 0.0002 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144900 [exp] 1343 / 0 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 284 / 2e-82 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 273 / 1e-78 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.006G090000 [exp] 220 / 3e-61 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G222500 [exp] 200 / 3e-54 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 197 / 2e-53 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.014G024000 [exp] 68 / 9e-12 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.001G397800 [exp] 66 / 7e-11 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 65 / 8e-11 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033222 [exp] 501 / 2e-167 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10001527 [exp] 498 / 9e-166 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10013348 [exp] 272 / 4e-79 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 199 / 1e-53 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033880 [exp] 186 / 5e-49 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 146 / 4e-36 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003569 [exp] 68 / 2e-13 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10024800 [exp] 61 / 9e-10 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 60 / 4e-09 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10018736 [exp] 59 / 5e-09 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G086000.1 pacid=42791028 polypeptide=Potri.001G086000.1.p locus=Potri.001G086000 ID=Potri.001G086000.1.v4.1 annot-version=v4.1 ATGGGTAGTTCGGTTTTAAAACAGAAACTGAAGAGTCTTTGTTGCAGTAATGGATGGTCTTATGGGGTTTTTTGGTGCTTTGATCAGATAAATTCCATGT TGTTGACCATGGAAGATGCCTACTATGAAGAGGAAATGGGGGCTGTAGTTAACAGTATGCTTTCAGAGGCCCACATACTAGGTGAAGGAATTGTTGGCCA AGCTGCTTCCACTGGAAAGCACCAGTGGATTTTCTCAGATGCTAGTGATGGAGGCTGGGATTCTGCTGCTTCTATTGGAGGTCAAGACATATTCCAGGAT GATTCTGAAATTCATCGCCAATTTTCTTCTGGAATAAAGACAATTGCAATAATCTCTGTGGAATCACATGGAGTGGTACAATTTGGATCCACCCTGAAGA TTTTGGAGAGAGATGAATTTTTGGATCAAACAAAAAGATTGTTTGGTGAGATGGAAAATGTTGACGGGCTTACTTCGAAGGCCAACTCGCCTTCATCTTT GAAGAGTGAAAGTTATGATCTAAATGAGTGGTTTGATTCCTTCTGCAACGGGAATATCATGCCCATGCTTGGTGGAAACTGCAATGAGCTGACGGAAATG GCTTATTCTTCGATGGATGTTACTCAGTCCTCTGCTTTCACATCAGATGCTGAACAAGATAGGATGAACCCTTTATGCTTGGATTCCTCTCTTCCTACTA ACCAGTTGAATACAGATGTCACCACTGAAGCTCAGATGATATTTTCTAGTCATCCCAGTGCTCAGTTTCAACAGGTGTCTTCTCAATCTCCATCTATGAA CAAAATAACTACCCAAACTCCTTGTACTAGTACGTGGATCAGTGGAGACTCTAATTTGACTTCATGGGAGTCAAAGTTCCAATCTGAAATGGTGGTCCAG GACTCTACAACTGTGTTCTCTACGGAAAGATCAATGAACAACCAGCATTCTGGTCCATCAATTCATGTTACAGAAAGAGAAACGAGCCTAAACAGATTCC CTGTAGAGTTCAACCCAGATGATTTGACAATTGATCTATCCAAATCCGGTGTAACAGATAATATTCTAGAGTGGTTTGCCCCTTCACCAGAGCATAGCAT AAGTGGAACGGCAGCCATAATGAATGGGAATCTTTCACAATCTGGAGGAGCCACTTCAGCATCATCAGGTCTAATTGGGGATCTCTTAGTTCACATTCCA AGCAAACAACCGGCTACTTCAGCTCAAAGTTCTGTCACTGAAACATATTTTTCCAGTGGAAAAGAGAAATCTGTGAGCGTCACCGGCGCTGAAAATGATC TGTTTGAAGGTTTGGGATTAGTATTCAGGGGTGGACAAACTGGGCATTGCTGGGAAGATATGATGATGCCTGTAGCAAGGAGTGGTCAGATAACCGCTAG CACTGGTGTTTCAGAATGCATCTCAGAGTTGGACGTTGGTTCCAAGGTTGGCCCTCAAAAAGGATTGTTCTCAGAATTAGGACTTGAAGAGCTTTTAGAT AGTGTTAGTAATTCTAGTTATGTTACAAAGTATAGCATTGATGATCAATTATCCAATGCTAAGAGAAGAAGAGTGGAAAATTCATTGGTAAGTAGTGATA AACTTCAGTTAGTGAATGCTTCTTACCCTACCAGCAGCAGGATGATGCAGCCTGCATATAATTTGGACAAGACAAAAAATCTTCCATCAAAACAAGAGGT GTTCCCCAAATCGCAAGTAAGCTTGTGGATTGATGATAGCTATAGCGTCAATACTGGAAGTTCTGGTTTACCAAAACCTGAGGAGCTTGCAAAGCCCACC AAGAAAAGAGCCAGACCTGGGGAAAGTACTAGACCTAGGCCGAAAGACCGTCAGCAGATACAAGACCGTATCAAAGAGTTGAAACAGATCATCCCTGATG GTGCAAAGTGTAGCATTGATGCTCTGTTGGATCGCACCATCAAGCACATGTTATTCTTGCAAAGTGTGACCAAATACGCTGAAAGGCTTAAACAAGCTGA CGAGCCAAAGTTGATTGGCCAGGAGAATAGACTGCTTCTTAAAGACAACACCACTAGCAGTGGTGGTGCTACATGGGCATTGGAAGTTGCAGACCAATCA ATGGTTTGCCCAATAATAGTTGAGGACCTCAGTCAACCTGGCCTAATGCTTATAGAGATGCTTTGTGAGGATCGGGGATTCTTTCTTGAGACAGCAGACG TAATCAAGGGCTTTGGTTTGAATATACTGAAGGGGCTGATGGAAAGTCGAGAGAATAAGATCTGGGCGCGTTTCATTGTTGAGGCAAATGTGCACATAAC AAGGGTGGAAGTGTTTTGGTACCTTCTCCAGCTTCTAGAACGAACAGGTACTAGTGTGATGGATTCAACAAAGCAGCCTAGTAATTCCATGCATGGAAGG ATTCCTGAGTTAAGCAGTTACCAGCTTCCTGCATTGCCATGTCCCGTCAGCCTGACCGAGACTATTCAATGA
AA sequence Show only first row Show all	>Potri.001G086000.1 pacid=42791028 polypeptide=Potri.001G086000.1.p locus=Potri.001G086000 ID=Potri.001G086000.1.v4.1 annot-version=v4.1 MGSSVLKQKLKSLCCSNGWSYGVFWCFDQINSMLLTMEDAYYEEEMGAVVNSMLSEAHILGEGIVGQAASTGKHQWIFSDASDGGWDSAASIGGQDIFQD DSEIHRQFSSGIKTIAIISVESHGVVQFGSTLKILERDEFLDQTKRLFGEMENVDGLTSKANSPSSLKSESYDLNEWFDSFCNGNIMPMLGGNCNELTEM AYSSMDVTQSSAFTSDAEQDRMNPLCLDSSLPTNQLNTDVTTEAQMIFSSHPSAQFQQVSSQSPSMNKITTQTPCTSTWISGDSNLTSWESKFQSEMVVQ DSTTVFSTERSMNNQHSGPSIHVTERETSLNRFPVEFNPDDLTIDLSKSGVTDNILEWFAPSPEHSISGTAAIMNGNLSQSGGATSASSGLIGDLLVHIP SKQPATSAQSSVTETYFSSGKEKSVSVTGAENDLFEGLGLVFRGGQTGHCWEDMMMPVARSGQITASTGVSECISELDVGSKVGPQKGLFSELGLEELLD SVSNSSYVTKYSIDDQLSNAKRRRVENSLVSSDKLQLVNASYPTSSRMMQPAYNLDKTKNLPSKQEVFPKSQVSLWIDDSYSVNTGSSGLPKPEELAKPT KKRARPGESTRPRPKDRQQIQDRIKELKQIIPDGAKCSIDALLDRTIKHMLFLQSVTKYAERLKQADEPKLIGQENRLLLKDNTTSSGGATWALEVADQS MVCPIIVEDLSQPGLMLIEMLCEDRGFFLETADVIKGFGLNILKGLMESRENKIWARFIVEANVHITRVEVFWYLLQLLERTGTSVMDSTKQPSNSMHGR IPELSSYQLPALPCPVSLTETIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	0	1
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Potri.006G081600 [exp]	3.16	0.7469
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	6.92	0.7085
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	9.79	0.7173
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	12.32	0.7382	Pt-PHB.1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	14.59	0.7323
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	17.66	0.7238
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	17.74	0.7185
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	18.76	0.6788	PIN7,Pt-PIN1.2
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	23.87	0.7072
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.005G242100 [exp]	29.47	0.6257

Compare expression of checked genes

Potri.001G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.