Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05675 348 / 6e-117 BTB/POZ domain-containing protein (.1.2) AT4G10800 288 / 2e-95 unknown protein AT1G63850 70 / 1e-12 BTB/POZ domain-containing protein (.1) AT5G60050 62 / 3e-10 BTB/POZ domain-containing protein (.1) AT3G50780 61 / 6e-10 unknown protein AT2G13690 60 / 2e-09 PRLI-interacting factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144700 [exp] 520 / 0 AT4G10800 265 / 2e-88 unknown protein Potri.006G202900 [exp] 371 / 1e-125 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.005G129700 [exp] 84 / 2e-17 AT3G50780 623 / 0.0 unknown protein Potri.007G032800 [exp] 82 / 2e-16 AT3G50780 654 / 0.0 unknown protein Potri.001G100900 [exp] 76 / 1e-14 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 74 / 7e-14 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 71 / 6e-13 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.004G154600 [exp] 69 / 3e-12 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.016G069566 [exp] 60 / 4e-11 AT3G05675 86 / 5e-21 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033220 [exp] 587 / 0 AT3G05675 346 / 6e-116 BTB/POZ domain-containing protein (.1.2) Lus10023030 [exp] 582 / 0 AT3G05675 348 / 2e-116 BTB/POZ domain-containing protein (.1.2) Lus10021269 [exp] 316 / 4e-104 AT3G05675 439 / 4e-152 BTB/POZ domain-containing protein (.1.2) Lus10013580 [exp] 315 / 2e-103 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2) Lus10022484 [exp] 77 / 5e-15 AT3G50780 602 / 0.0 unknown protein Lus10038475 [exp] 75 / 3e-14 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 71 / 6e-13 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 69 / 4e-12 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023573 [exp] 63 / 3e-10 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 62 / 3e-10 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.001G086100.2 pacid=42789170 polypeptide=Potri.001G086100.2.p locus=Potri.001G086100 ID=Potri.001G086100.2.v4.1 annot-version=v4.1 ATGGACAAAACGGGAAAAGGCAAGCCGTGCGGATTTGGAGATGAGAACACTAGTGATGTTGTTCTACACTTGAGAAATTGTGAAGGAAGACCTGAAGTTT TCTACTCCCATTCCCTTACCTTAGTAAGCAAGAGTAAGTTCTTTGCAGATTGGTTCTCCAGTCCAGACTCTGGTAAATGTGTTGAGATTCACTGCACAGA GTTTAACTACGATCATCATGTTAACTTCTTGAGATTGCTGTACCTCCCTGTGGACTTGCAATTGGACTCCTTGGACTCTGTTAAATCTGCTATTGGGATT CTCGAGGTATCTGTTGCTTTCAGCTGTGAAGAGGTCACAAAGAACTGCATCCATTACTTAGAGGCTGTTCCTTGGGAGGACAAGGAAGAGGAACAAATAA TAAAAGCAGTCACCAATCTAGGTCCAATTGCCATGCCCATAATTGCCAGGATCAAACCAGTAGATTTTACTGCTACCAAAAATGTTTTTGTTTCAGCAGT TCGCTTTGCGACATCTACTTGCGGGTCATGCCCTCCATTTGGTGATGAACTTAAAATCTCTGCTCAAGAACAAGTAGAATACATGTTAGGGGAAGATGAG GACATGCCATTGGTTATGGCTGATGATGAAGTAAAATCAGTTGTGAGAGTAGGTCTTTCCAGAATCTTTTCTACATTTGAAAAGCAATTATCGTCCCTAC TTGTGGAGTCTGACCTCACATCTGAGACAGCTGAGGACAATATATTGCAGTGTGTATCTGATCTGGAGTGGATGGGCAATTTACTTCCCAAGATGGAATT AATGAAGGACTTTGTATCAAACTGGGCTGAGATCTCTGGCAACGTTTTGGGGATACTTGAAGACAAGAAACTTGAATCTCTCATGTGGGGTTTGAAAGTG AAATTGATTGAAGTGAGCGGAAAGGCATTAGAAGCAGTTGGTTATGGCAGTGTGATTCTTCCAGCTCCAGTTCGGGTGCAGCTGCTAAAGACATGGCTTC CTTATATAAGGAAAATAAAGCCTCTTTTAGATTCTAAAGGTGCTGAAGACACGAGTTTTCCTCACAAGATGGATGAAGATCTGTGCCAGAGTATCGAAGG GGCAATTGTCTCATTGGTACTGGCATTGCCATCAAATGACCAAGCTGATATCCTGGCGGATTGGATGAAAGCAGATCAGGTTAGGTATCCAGACTTGAGT GAAGCTTTTGAGGTTTGGTGTTATAGAACCAAGTCGGCAAAGAGAAGATTGGTCGAGGGCTTAGACAGGGTTGGCAACACAACTGTCAGCCTTTAA
AA sequence Show only first row Show all	>Potri.001G086100.2 pacid=42789170 polypeptide=Potri.001G086100.2.p locus=Potri.001G086100 ID=Potri.001G086100.2.v4.1 annot-version=v4.1 MDKTGKGKPCGFGDENTSDVVLHLRNCEGRPEVFYSHSLTLVSKSKFFADWFSSPDSGKCVEIHCTEFNYDHHVNFLRLLYLPVDLQLDSLDSVKSAIGI LEVSVAFSCEEVTKNCIHYLEAVPWEDKEEEQIIKAVTNLGPIAMPIIARIKPVDFTATKNVFVSAVRFATSTCGSCPPFGDELKISAQEQVEYMLGEDE DMPLVMADDEVKSVVRVGLSRIFSTFEKQLSSLLVESDLTSETAEDNILQCVSDLEWMGNLLPKMELMKDFVSNWAEISGNVLGILEDKKLESLMWGLKV KLIEVSGKALEAVGYGSVILPAPVRVQLLKTWLPYIRKIKPLLDSKGAEDTSFPHKMDEDLCQSIEGAIVSLVLALPSNDQADILADWMKADQVRYPDLS EAFEVWCYRTKSAKRRLVEGLDRVGNTTVSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05675			BTB/POZ domain-containing prot...		Potri.001G086100 [exp]	0	1
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	10.24	0.8573
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	16.52	0.8512
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Potri.007G130300 [exp]	22.97	0.8298
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Potri.007G006300 [exp]	25.86	0.8653
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	30.29	0.8530
AT1G09520			unknown protein		Potri.010G002200 [exp]	30.33	0.8439
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	31.08	0.8117	HDA902,RPD3.1
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	36.66	0.8433
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	49.47	0.8403	HMGB915
					Potri.013G031800 [exp]	50.67	0.8518

Compare expression of checked genes

Potri.001G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.