Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42000 273 / 2e-95 ORMDL family protein (.1.2) AT1G01230 254 / 2e-88 ORMDL family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144600 [exp] 306 / 1e-108 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.014G101000 [exp] 263 / 1e-91 AT1G01230 285 / 3e-100 ORMDL family protein (.1) Potri.002G174400 [exp] 263 / 2e-91 AT1G01230 254 / 3e-88 ORMDL family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033219 [exp] 277 / 3e-97 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10023031 [exp] 276 / 9e-97 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10005980 [exp] 263 / 1e-91 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10030232 [exp] 248 / 9e-79 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10003209 [exp] 192 / 4e-64 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 189 / 2e-62 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 83 / 2e-21 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [poplar] [flax] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Potri.001G086300.1 pacid=42793603 polypeptide=Potri.001G086300.1.p locus=Potri.001G086300 ID=Potri.001G086300.1.v4.1 annot-version=v4.1 ATGTACGTGAAAGCTGAGCCAGCGACAGATGTGAATAGGAACACGGAGTGGTTCACATATCCAGGAGTTTGGACAATTTATATGCTCATTGTTTGCATGT CTTTGCTTCTTGTTCTTTCCATCTTTGGTTGTTCTGCTGGGATGGCCTGGACTATTGTCCATCTTTGTCATTTTGCTGTTACATATCACTTTTTTCACTG GAAGAAGGGAACACCTTTTGCTGACGACCAGGGTATCTACAATGGATTGACTTGGTGGGAGCAAATAGAAAATGGCAAGCAACTCACACGCAACAGGAAG TTTCTGACAGTTGTACCTGTAGTGCTGTATTTGATAGCCTCGCATACAACAGACTATCAAAACCCAATGCTCTTCTTCAACACATTGGCTGTATTTGTGC TGGTTGTTGCTAAGTTCCCACACATGCACAAGGTTCGCATATTTGGAATCAATGCTGATCATTGA
AA sequence Show only first row Show all	>Potri.001G086300.1 pacid=42793603 polypeptide=Potri.001G086300.1.p locus=Potri.001G086300 ID=Potri.001G086300.1.v4.1 annot-version=v4.1 MYVKAEPATDVNRNTEWFTYPGVWTIYMLIVCMSLLLVLSIFGCSAGMAWTIVHLCHFAVTYHFFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRK FLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPHMHKVRIFGINADH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42000			ORMDL family protein (.1.2)		Potri.001G086300 [exp]	0	1
AT1G65020			unknown protein		Potri.013G079201 [exp]	2.00	0.9235
AT3G13410			unknown protein		Potri.001G000900 [exp]	3.46	0.9260
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	3.46	0.9054
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	4.69	0.8950	Pt-GSNAP.1
AT1G09150			pseudouridine synthase and arc...		Potri.013G013700 [exp]	9.94	0.8971
AT1G22520			Domain of unknown function (DU...		Potri.019G079101 [exp]	10.00	0.9010
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.011G077900 [exp]	10.00	0.9023
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.015G126301 [exp]	12.96	0.8870
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	14.42	0.8921
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	14.69	0.9008	PBA1.2

Compare expression of checked genes

Potri.001G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.