Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DOF4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24060 174 / 2e-52 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 154 / 9e-45 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 154 / 1e-44 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT1G64620 143 / 2e-40 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 112 / 2e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G55370 110 / 6e-28 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT4G00940 107 / 4e-27 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 107 / 8e-27 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 105 / 8e-27 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G02460 107 / 2e-26 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144500 [exp] 387 / 8e-137 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 243 / 5e-80 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 228 / 2e-74 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G018700 [exp] 229 / 3e-74 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 203 / 2e-64 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G081300 [exp] 123 / 5e-33 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 121 / 2e-32 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.009G029500 [exp] 110 / 4e-28 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 108 / 2e-27 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003207 [exp] 155 / 6e-45 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 150 / 2e-43 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 150 / 3e-42 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 132 / 3e-36 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 131 / 6e-36 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 120 / 3e-34 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 123 / 8e-33 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 122 / 3e-32 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10012619 [exp] 122 / 3e-32 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10022373 [exp] 108 / 1e-28 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G086400.8 pacid=42792998 polypeptide=Potri.001G086400.8.p locus=Potri.001G086400 ID=Potri.001G086400.8.v4.1 annot-version=v4.1 ATGGATACTGCTCAGTGGCCACAGGAGATAGTGGTGAAACCAATAGAAGAGATAGTTGTAAATACATGCTCGAAGCCTCCTGCTTTGGAGAGGAAGGTAA GGCCTCAAAAGGAACAGGCCCTCAACTGTCCGAGGTGCAATTCAACTAACACCAAGTTCTGTTACTATAACAACTACAGTCTTACACAACCTAGGTACTT TTGTAAGACTTGTAGAAGGTATTGGACGGAAGGTGGTTCTCTAAGGAGCATTCCTGTTGGTGGAGGTTCAAGAAAGAACAAGAGATCATCAGCTTCTTCT TCATCTTCTTCAAAGAAACTTCCTGATCTGATATCACCACCAACTTTGTCACAAACCTCTACTGAGAACCATAAGATCCATGAAGGCCAAGATCTAAACC TAGCTTTCCCATCCACTCAAGGTATTAGAAGTTTCTCTGAATTGATCCAATTTCCGAGCATTAACGAAAACAACAACAAGACCCAAATATCTTCCTCTAC TTCGGCATCCACTAACACATCCCAACTTTCAGCTTTAGAGCTGTTAACTGGAATCTCTTCAAGGGGCTTGAATTCTTTTCCCATGCCAGTTCATCAAGAT CCAAGTACACTTTACCCATCTGGTTTTCCTCTTCAAGATTTCAAACCAACCTTGAGTTTCTCTCTGGATGGGCTTGGAAGTGGTTATGGAGATCTCCAAG GGGTTCATGAAACTAATGGAAGACTTTTGTTTCCATTTGAAGATTTAAAGCAACAAGTTTCAAGCACAGCTGATATTGAGCAAAATAAAGAGCATGGTGA TTCCACAGGATATTGGACTGGGATGTTAGGTGGAGGATCATGGTAA
AA sequence Show only first row Show all	>Potri.001G086400.8 pacid=42792998 polypeptide=Potri.001G086400.8.p locus=Potri.001G086400 ID=Potri.001G086400.8.v4.1 annot-version=v4.1 MDTAQWPQEIVVKPIEEIVVNTCSKPPALERKVRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSSASS SSSSKKLPDLISPPTLSQTSTENHKIHEGQDLNLAFPSTQGIRSFSELIQFPSINENNNKTQISSSTSASTNTSQLSALELLTGISSRGLNSFPMPVHQD PSTLYPSGFPLQDFKPTLSFSLDGLGSGYGDLQGVHETNGRLLFPFEDLKQQVSSTADIEQNKEHGDSTGYWTGMLGGGSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	0	1	Pt-DOF4.2
					Potri.017G044300 [exp]	1.41	0.8125
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	7.48	0.8020
AT5G17910			unknown protein		Potri.019G044500 [exp]	7.68	0.8171
AT5G45540			Protein of unknown function (D...		Potri.015G114900 [exp]	7.74	0.8102
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	10.58	0.7991
					Potri.015G071100 [exp]	11.00	0.7934
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	12.16	0.8106
AT3G29310			calmodulin-binding protein-rel...		Potri.017G091100 [exp]	20.34	0.7614
AT4G17080			Histone H3 K4-specific methylt...		Potri.014G052300 [exp]	24.49	0.7533
					Potri.010G186750 [exp]	27.45	0.7586

Compare expression of checked genes

Potri.001G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.