Plant FIBer expression Database

Potri.001G086800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64600 642 / 0 methyltransferases;copper ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017309
[exp]
727 / 0 AT1G64600 635 / 0.0 methyltransferases;copper ion binding (.1)
Lus10003205
[exp]
723 / 0 AT1G64600 636 / 0.0 methyltransferases;copper ion binding (.1)
Lus10017311
[exp]
143 / 8e-41 AT1G64600 141 / 1e-40 methyltransferases;copper ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22
CL0063 NADP_Rossmann PF13489 Methyltransf_23 Methyltransferase domain
Representative CDS sequence
>Potri.001G086800.1 pacid=42790940 polypeptide=Potri.001G086800.1.p locus=Potri.001G086800 ID=Potri.001G086800.1.v4.1 annot-version=v4.1
ATGGCAAGCCTAATACCTGAAACCACCAAAAAACTCTTCACCGCAGAAAACCTCCGCTCTGCCACCAAACAATCCGACCGCTGCCTCATCGTCCCCGTCC
GCCTCCGTCGTGCCATCAAAAAATACCTCCGAGAGCAAGAAGAGCCACACATGAAGAAAAAAGTTTTAAGACTATCAGAATCATTCAGCGATATCAAAGA
CAAAAACATGATGTTAGCAATTAATACTTCAAAGGAGCTAGTTGAAGATCCATTTAAGTCTATGGAGAGGTCTAAGAGATGGAAAATTAAGAGTTCTTAT
GGCGACATTGGACTTAGTTATAGAGATGATGAGACCATTGCTTATGTTGCTTCTCGTATGCCTGCTGTTTTCTCTGCTTGCTATAGAGTCCTCAGTGAAG
TTAGGAGAAGGTTACCGGGTTTTTCTCCTACTAAAATTTTGGATTTTGGAGCTGGGACTGGTTCAGCTTTCTGGGCAATAAGAGAAGTGTGGCCAAAGTC
ATTACAGAAGGTAAATTTAGTGGAACCATCACAGTCTATGCAGCGTGCCGGTAGAAGTCTTATACAAGATTTGAAGAATTTGCCACTTATTCATAGCTAT
AATAGCCTTCAAGACTTGAGTAAAAGTATTCGCAAGTCCGAGAGGAAACATGACCTTGTAATTGCTTCCTATGTTCTGGGGGAGATACCATCATTGAAGG
ACCGAATTACTATAGTGCGCCAGCTTTGGGAACTTACGGGGGATGTTTTGGTTTTAGTTGAGCCAGGTACGCCACATGGATTTGGTATCATATCACAGAT
GCGATCTCACATACTATGGATGGAGAAAAGGAAATGTGGTAAAGCTGAAGGGAAAATCAATGAACCTTGTAAGGATTTGGTGCCCTACAAAGGTGGTGCA
TTTGTAATTGCTCCTTGTTCTCATGATGGGAGCTGTCCTTTGGTGAAATCTGGAAAATACTGTCATTTTGTTCAGCGGTTGCAGAGGACAACATCACAGC
GAGCATACAAGCGTTCCAAGGGTGAAACTTTACGTGGATTTGAGGATGAGAAGTTTTCCTTTGTCGCTTTCAGACGAGGACAACGACCCCGAAAACCTTG
GCCTCTTGATGGCATGAGATTTGAGACTTTGAAGGAGCAGCATGCTAAAAGAAATCCAGTAGATCTAGAGATTGATTATGAGGACTTGATTGAGCAAAAT
CAACCCGAGGAGGAGGTTCCATATGAAGAGGTGGACCCAGTTTACTATGATTCTGATGTCATTGAAACTGACACCAATGATGATAATGACGAAGAGGAGC
AAGAAGAAGAAGCACATGCTGATCTTGGGGGAGGCTGGGGAAGGATAGTTTTCTCACCTTTTAAGAGAGGCAGGCAGGTAACCTTGGATGTTTGCCGATC
AAACAATCGTGATAACTCAGAGGGCTCTTTTGAACGTATAGTTGTCACGAAGAGTAAAAGTCCTGCTTTACATTATCAGGCACGAAGATCTCACTGGGGT
GACTTGTGGCCATTTTAA
AA sequence
>Potri.001G086800.1 pacid=42790940 polypeptide=Potri.001G086800.1.p locus=Potri.001G086800 ID=Potri.001G086800.1.v4.1 annot-version=v4.1
MASLIPETTKKLFTAENLRSATKQSDRCLIVPVRLRRAIKKYLREQEEPHMKKKVLRLSESFSDIKDKNMMLAINTSKELVEDPFKSMERSKRWKIKSSY
GDIGLSYRDDETIAYVASRMPAVFSACYRVLSEVRRRLPGFSPTKILDFGAGTGSAFWAIREVWPKSLQKVNLVEPSQSMQRAGRSLIQDLKNLPLIHSY
NSLQDLSKSIRKSERKHDLVIASYVLGEIPSLKDRITIVRQLWELTGDVLVLVEPGTPHGFGIISQMRSHILWMEKRKCGKAEGKINEPCKDLVPYKGGA
FVIAPCSHDGSCPLVKSGKYCHFVQRLQRTTSQRAYKRSKGETLRGFEDEKFSFVAFRRGQRPRKPWPLDGMRFETLKEQHAKRNPVDLEIDYEDLIEQN
QPEEEVPYEEVDPVYYDSDVIETDTNDDNDEEEQEEEAHADLGGGWGRIVFSPFKRGRQVTLDVCRSNNRDNSEGSFERIVVTKSKSPALHYQARRSHWG
DLWPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64600 methyltransferases;copper ion ... Potri.001G086800
[exp]
0 1
AT1G65030 Transducin/WD40 repeat-like su... Potri.012G107400
[exp]
5.00 0.8894
AT3G21110 PUR7, ATPURC PURIN C, purin 7 (.1.2) Potri.017G051500
[exp]
7.48 0.8593
AT3G13460 ECT2 evolutionarily conserved C-ter... Potri.019G034300
[exp]
7.93 0.8698
AT5G39960 GTP binding;GTP binding (.1) Potri.004G230600
[exp]
11.66 0.8560
AT5G16930 AAA-type ATPase family protein... Potri.011G143300
[exp]
13.85 0.8477
AT3G16260 TRZ4 tRNAse Z4 (.1) Potri.001G186900
[exp]
14.83 0.8658
AT4G38890 FMN-linked oxidoreductases sup... Potri.009G125500
[exp]
17.32 0.8528
AT5G11170 DEAD/DEAH box RNA helicase fam... Potri.006G253100
[exp]
18.49 0.8471
AT1G28530 unknown protein Potri.004G051000
[exp]
22.04 0.8181
AT2G31810 ACT domain-containing small su... Potri.007G142300
[exp]
22.49 0.8769

Potri.001G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.