Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24040 685 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144000 [exp] 1045 / 0 AT4G24040 706 / 0.0 trehalase 1 (.1) Potri.003G143900 [exp] 1033 / 0 AT4G24040 692 / 0.0 trehalase 1 (.1) Potri.006G068300 [exp] 246 / 1e-79 AT4G24040 156 / 9e-46 trehalase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023034 [exp] 812 / 0 AT4G24040 683 / 0.0 trehalase 1 (.1) Lus10032435 [exp] 773 / 0 AT4G24040 653 / 0.0 trehalase 1 (.1) Lus10023035 [exp] 765 / 0 AT4G24040 667 / 0.0 trehalase 1 (.1) Lus10032434 [exp] 642 / 0 AT4G24040 540 / 0.0 trehalase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF01204 [poplar] [flax] Trehalase Trehalase
Representative CDS sequence Show only first row Show all	>Potri.001G087100.1 pacid=42788029 polypeptide=Potri.001G087100.1.p locus=Potri.001G087100 ID=Potri.001G087100.1.v4.1 annot-version=v4.1 ATGGCTCAACAAATCCTTAATCCTGTGTTTTTCTCGTTATTGTTTCTAACAACAATGACTCTAACAAGAGGTTTGTCTATAAAATGCCGGGTAACAGTAG TACCAACAACACCCTTGGTTACCTTTCTTGAACGTGTCCAAGAAACTGCCCTCGACACTTTTGGAGAAAAGAACTTTGACGCAAAACTTTACGTCGATTT GTCATTAAAACTCAATCTTTCGAAGACAGAGAAAGCTTTTGATGGGCTACCAAGAAGTGGTGAAAACGGGACTGTTTCAGTCAAAGCCTTGAAAGAGTTT ATTGCAACCTACTTTGATGATGCAGGGGATGATCTCCTGTACTATGATCCAGTGGATTTTGTTCCTGAACCCGAAGGGTTCTTGCCTAAAGTAAAGAATC CAGAAGTGAGGGCATGGGCTCTCGAGGTTCATGCTTTATGGAAGAATTTGAGTAGAAAAGTCTCCGATGGGGTTCGTGAACAGCCTGAATTGCATACTTT ACTTCCCCTGCCTGAGGCAGTGGTTGTGCCTGGTTCACGTTTCATAGAGGTTTATTATTGGGACTCGTATTGGGTAATTAGGGGCTTGCTGTCAAGTAAA ATGTATGAGACTGCAAAAGCAATTGTGACAAATCTCATTTTCCTTGTGGATACGTATGGCTATGTTCTTAATGGTTCAAGGGCCTATTACACCAATAGGA GCCAACCTCCCCTCCTGAGTGCAATGGTTTATGAGATATATAATAGAACTTGTGATGTGGAATTGGTTAGAAAGGCTCTTCCTGCATTGCTCAAAGAACA TGCCTTTTGGAACTCTGAGATACATAAGGTCACCATCCAGGATGCTCAAGGCTGCAACCACAACTTAAGTCGGTATTATGCAATGTGGAACAAACCCAGG CCCGAATCTTCTACAAAAGATAAGGAATCTGCTTCCAAGTTCTTGAGTAATTCTGAGAAACAACAGTTTTACCACGACATAGCTTCAGCTGCTGAATCCG GATGGGATTTTAGTACAAGATGGATGAGGAATACGTCAGAATTCACTACATTGTCCACGACATCAATTTTACCTGTTGATTTAAATGTTTACATACTCAA GATGGAACTAGATATTGCCTTTTTGGCAAATGTCCTCGGAAACAAAGCCACAATGGAGAGTTTCTTGGAAGCTGCCGAAGCAAGAAAAAATGCAATCAAT TCTGTTTTCTGGAATGGCGAGAAGGGACAGTGGTTTGATTACAGGCTCACTAATGGCACTATATGCAAGGAATCTGAAACATGGCAAGCTTGTAACCAAA ATCAGAATGTATATGCTTCGAACTTTATTCCTTTGTGGATAGATTTGTTCCATTCAGATGCTGCTTTGGTGAAGAATGTCATGGGGAGTTTTCAAAGTTC AGGCCTGATTCATGTTGCTGGAATTGCCACTTCTTTAATAAATTCAGGACAACAATGGGACTTTCCAAATGGTTGGGCGCCACTTCAACACATGATTGTT GAAGGTTTGCTGAGCTCTGGATTAAAAGAAGCAAGGTCATTGGCAGAAGACATAGCTGTGAGGTGGATCAAAACCAACTACGTTGGATACAAGAAAACAG GCGCAATACATGAAAAATACGATGTGCAAAAATGTGGAGAATTTGGAGGTGGCGGAGAATACATACCCCAGACTGGTTTTGGTTGGTCAAATGGAGTTAC ATTGGCATTTTTGGAGGAGTTTGGATGGCCTGAAGACCGGAGCATAGGTTGTTGA
AA sequence Show only first row Show all	>Potri.001G087100.1 pacid=42788029 polypeptide=Potri.001G087100.1.p locus=Potri.001G087100 ID=Potri.001G087100.1.v4.1 annot-version=v4.1 MAQQILNPVFFSLLFLTTMTLTRGLSIKCRVTVVPTTPLVTFLERVQETALDTFGEKNFDAKLYVDLSLKLNLSKTEKAFDGLPRSGENGTVSVKALKEF IATYFDDAGDDLLYYDPVDFVPEPEGFLPKVKNPEVRAWALEVHALWKNLSRKVSDGVREQPELHTLLPLPEAVVVPGSRFIEVYYWDSYWVIRGLLSSK MYETAKAIVTNLIFLVDTYGYVLNGSRAYYTNRSQPPLLSAMVYEIYNRTCDVELVRKALPALLKEHAFWNSEIHKVTIQDAQGCNHNLSRYYAMWNKPR PESSTKDKESASKFLSNSEKQQFYHDIASAAESGWDFSTRWMRNTSEFTTLSTTSILPVDLNVYILKMELDIAFLANVLGNKATMESFLEAAEARKNAIN SVFWNGEKGQWFDYRLTNGTICKESETWQACNQNQNVYASNFIPLWIDLFHSDAALVKNVMGSFQSSGLIHVAGIATSLINSGQQWDFPNGWAPLQHMIV EGLLSSGLKEARSLAEDIAVRWIKTNYVGYKKTGAIHEKYDVQKCGEFGGGGEYIPQTGFGWSNGVTLAFLEEFGWPEDRSIGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.001G087100 [exp]	0	1
AT5G05800			unknown protein		Potri.015G137800 [exp]	1.00	0.8825
AT1G30910			Molybdenum cofactor sulfurase ...		Potri.003G154900 [exp]	4.47	0.8634
					Potri.002G155700 [exp]	9.16	0.8482
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	9.48	0.8282
AT3G12620			Protein phosphatase 2C family ...		Potri.016G082800 [exp]	10.72	0.7544
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	12.64	0.8292
AT3G22430			unknown protein		Potri.010G087400 [exp]	14.24	0.8325
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	15.55	0.8074
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	15.96	0.8441	STGA1.2
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	16.49	0.7934

Compare expression of checked genes

Potri.001G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.