Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GCN3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64550 1145 / 0 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G60790 456 / 8e-153 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT3G54540 456 / 3e-151 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT5G64840 211 / 8e-59 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 199 / 1e-54 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT1G28010 75 / 1e-13 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G27940 75 / 1e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28345 71 / 3e-12 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT4G25960 70 / 4e-12 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28390 69 / 7e-12 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254400 [exp] 459 / 4e-152 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.004G214300 [exp] 449 / 9e-150 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.008G003300 [exp] 452 / 2e-149 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.009G007800 [exp] 443 / 2e-147 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.007G080600 [exp] 215 / 3e-60 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 212 / 4e-59 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.002G019600 [exp] 73 / 6e-13 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.017G081100 [exp] 72 / 7e-13 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.001G417600 [exp] 72 / 1e-12 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023043 [exp] 1172 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10032431 [exp] 1162 / 0 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10016184 [exp] 460 / 1e-152 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10029363 [exp] 460 / 2e-152 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10038681 [exp] 450 / 3e-150 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10028810 [exp] 447 / 6e-149 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10037947 [exp] 428 / 1e-140 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10005798 [exp] 216 / 2e-60 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10006804 [exp] 214 / 9e-60 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 79 / 1e-17 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0023 [poplar] [flax] P-loop_NTPase PF12848 [poplar] [flax] ABC_tran_Xtn ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.001G087300.2 pacid=42792746 polypeptide=Potri.001G087300.2.p locus=Potri.001G087300 ID=Potri.001G087300.2.v4.1 annot-version=v4.1 ATGACAGAAGTGGCGAACTCAGTGGTTCACGAGGTGCTTGGCCCCCGATTCCTGGAAGTCGATCAACCAATCATCGATTACATAATCAACGTCCTCGCCG ACGAAGATTTTGATTTCGGCGATGAAGGCGAAGGCGCTTTTAATGCCATCGGTGAACTCCTCGTCGGGGCCGAATGCGTCTCCGATTTCTCCGAATGTCG CCTGGTTTGTAGTAAGCTGAGTGACAAGTTCGGGAAGCATGGATTGGTGAAACCGAAACCGACGGTAAGGAGTCTTACGACTCCGTTTCGAATGGATGAT GGAATGGACGAGGAAGTAAAGAAGAAGAAGCCGGAGCCCATTGATGGTCCTGTTCTCACCGAGCGTGATAAAATGAAGATTGAAAGGAGAAAGAGGAAGG ATGAGCGCCAACGAGAGGCACAGTACCAAATACATCTGGCGGAAATGGAGGCGGTTAGAGCTGGAATGCCTGTTGCATGTGTAACTCATGATGGTGGTGG TGGAGGACCAAATATTAAGGACATTCATCTGGAAAATTTCAATATCTCCGTGGGTGGTCGGGATCTCATTGTAGATGGTTCTGTGACACTTTCTTTTGGG AGGCATTATGGGCTTGTTGGAAGAAACGGTACAGGAAAAACAACTTTCCTCAGGTACATGGCTCTGCATGCCATTGATGGTATTCCTCGAAATTGCCAAA TTTTACATGTTGAGCAAGAAGTGGTTGGTGATGATATATCAGCATTGCAATGTGTTCTGGACTCTGATATTGAGAGAACCCGGCTTTTGGAAGAAGAGGT TCGTCTACATGCACAACAGAGAGACTTGGACTTTGAGGATGCCACTGGAAATGGAAAGGGTGATCAGATTGGGGCAGTTAACAAAGATGCTATTTCACAA AGGCTTGAGGAAATATATAAGAGGCTTGAGTTAATCGATGCATATTCTGCGGAAGCACGTGCTGCTTCCATTCTTGCGGGTCTTAGTTTCTCCCCAGAAA TGCAGAAGAAGGCAACCAAAACTTTTTCAGGAGGATGGAGGATGAGAATAGCTCTTGCTCGTGCTCTGTTTATAGAGCCTGATGTATTGCTGCTTGATGA ACCTACGAATCATCTTGATCTCCATGCTGTCCTGTGGCTGGAATCTTACTTGGTGAAGTGGCCGAAAACGTTTATAGTTGTTTCCCATGCTAGAGAATTC TTGAACACAGTGGTCACTGATATTCTCCACTTACAAGGGCAAAAACTGACTGGTTACAAAGGTGATTATGATACCTTTGAAAGGACACGGGAAGAGCAAA TTAAGAACCAACGGAAGGCAATTGAGGCAAATGAAAAATCAAGAGCCCACATGCAGACCTTTATTGACAAGTTCCGTTATAATGCAAAGAGGGCATCTCT TGTACAGTCAAGAATCAAGGCACTGGACCGATTGGGTCATATGGATGAGATTGTTAATGACCCCGACTATAAATTTGAGTTTCCAACTCCAGACGATAGA CCTGGTGCTCCTATAATAAGTTTCAGTGATGCATCATTTGGTTATCCCGGTGGCCCTTTAATGTTCAAGAACTTGAATTTTGGGATCGATTTGGATAGCC GTATTGCAATGGTTGGACCAAATGGCATTGGCAAATCAACAATACTAAAACTAATAGCAGGGGAGCTACAACCAACCTCTGGTACAGTCTTTCGTTCTGC AAAGGTCCGCATTGCTGTGTTTAGTCAGCACCATGTTGATGGACTGGATCTATCTTCCAATCCCCTTCTGTATATGATGCGTTGCTTCCCAGGAGTGCCT GAACAAAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTTACGGGAAATCTTGCACTTCAACCGATGTACACCTTGTCTGGTGGTCAGAAAAGCAGGGTTG CATTTGCAAAGATAACTTTCAAGAAACCACACATAATATTGCTTGATGAGCCATCCAATCATCTTGATTTGGATGCGGTGGAGGCACTAATCCAAGGCCT TGTTTTGTTCCAAGGAGGGATTCTCATGGTTAGTCATGATGAGCATTTAATTTCTGGAAGTGTGGATGAACTATGGGTGGTATCGCAAGGAAGGGTGACA CCTTTCCACGGGACTTTCCTGGATTATAAGAAGATACTCCAATCATCTTGA
AA sequence Show only first row Show all	>Potri.001G087300.2 pacid=42792746 polypeptide=Potri.001G087300.2.p locus=Potri.001G087300 ID=Potri.001G087300.2.v4.1 annot-version=v4.1 MTEVANSVVHEVLGPRFLEVDQPIIDYIINVLADEDFDFGDEGEGAFNAIGELLVGAECVSDFSECRLVCSKLSDKFGKHGLVKPKPTVRSLTTPFRMDD GMDEEVKKKKPEPIDGPVLTERDKMKIERRKRKDERQREAQYQIHLAEMEAVRAGMPVACVTHDGGGGGPNIKDIHLENFNISVGGRDLIVDGSVTLSFG RHYGLVGRNGTGKTTFLRYMALHAIDGIPRNCQILHVEQEVVGDDISALQCVLDSDIERTRLLEEEVRLHAQQRDLDFEDATGNGKGDQIGAVNKDAISQ RLEEIYKRLELIDAYSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDVLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREF LNTVVTDILHLQGQKLTGYKGDYDTFERTREEQIKNQRKAIEANEKSRAHMQTFIDKFRYNAKRASLVQSRIKALDRLGHMDEIVNDPDYKFEFPTPDDR PGAPIISFSDASFGYPGGPLMFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVDELWVVSQGRVT PFHGTFLDYKKILQSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Potri.001G087300 [exp]	0	1	GCN3.1
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	7.34	0.7295
AT3G02650			Tetratricopeptide repeat (TPR)...		Potri.001G361500 [exp]	12.96	0.7059
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	15.23	0.7156
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	22.89	0.6846
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.017G099200 [exp]	25.49	0.6576
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	29.18	0.6646
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	30.16	0.6395
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	31.06	0.6832
AT3G07870			F-box and associated interacti...		Potri.011G137200 [exp]	32.49	0.6547
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	34.69	0.6638

Compare expression of checked genes

Potri.001G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.