Plant FIBer expression Database

Potri.001G087400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55090 1274 / 0 carbon-nitrogen hydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G143700
[exp]
1414 / 0 AT1G55090 1291 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017307
[exp]
1323 / 0 AT1G55090 1306 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Lus10003203
[exp]
1323 / 0 AT1G55090 1303 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Lus10000200
[exp]
768 / 0 AT1G55090 732 / 0.0 carbon-nitrogen hydrolase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00795 CN_hydrolase Carbon-nitrogen hydrolase
CL0039 HUP PF02540 NAD_synthase NAD synthase
Representative CDS sequence
>Potri.001G087400.1 pacid=42791817 polypeptide=Potri.001G087400.1.p locus=Potri.001G087400 ID=Potri.001G087400.1.v4.1 annot-version=v4.1
ATGAGGCTGTTAAAGGTAGCTACTTGTAACTTGAACCAATGGGCAATGGATTTTGACTGTAATTTAAAAAACATAAAAGAGTCAATAACCCAAGCTAAAC
AAGCTGGTGCTGTTATTAGACTTGGCCCTGAGCTTGAAATCACTGGTTATGGCTGTGAAGATCATTTCTTGGAACTTGACACTATCAATCATGGCTGGGA
GTGCTTGAAAGAGATATTGGTAGGTGATTGGACAGATGGGATATTGTGTAGTATAGGAATGCCTGTAATTAAAGGATCAGAGCGTTATAATTGTCAAGTT
TTGTGCTTTAACAGAAAGATTATTATGATTCGTCCGAAAATGTGGCTCGCAAATGATGGGAATTATAGAGAACTCAGGTGGTTTACAGCATGGAAACACA
AAGATCAGCTTGTGGACTTTCAGCTCCCTAGTGAAATTGCCGAGGCTATTTCACAGAAATCAGTGCATTTTGGTTATGGATATGTGCAGTTTTTAGATAC
AGCTGTTGCTGCCGAAGTTTGTGAAGAGCTTTTCACTCCTATCCCTCCTCATGCTGAGCTTGCACTCAATGGGGTTGAAGTGTTTATGAATGCAAGTGGA
AGTCACCACCAATTGAGAAAGCTTGATGTTCGTCTTCGCGCTTTTATAGGTGCTACTCATACTTGTGGAGGAGTTTACATGTACAGTAATCACCAAGGAT
GCGATGGTGGCCGCCTTTATTACGATGGGTGCTCTTGCGTTGTTGTGAATGGAGAAGTGGTTGCCCAAGGCTCACAGTTTTCTTTAAGGGATAGTGAGGT
TGTTCTTGCCCAAGTGGATCTGGATGCGGTTGCTAGTCTAAGAGGATCTATTAGTAGTTTTCAAGAACAAGCGAGTTACAAAAACACAGTATCATCAGTC
CTGGTGCCATACAAGCTCTGTCAGCCTTTTAGCATGCAAATGTCCCTTTCTAGCCCCCTTAAGATTAATTATCACTCTCCCGAGGAGGAAATAGCCTTTG
GCCCTGGTTGCTGGCTATGGGACTATTTAAGAAGAAGCGGAGCTTCTGGATTTTTGCTTCCTCTTTCTGGTGGCGCAGATAGCTCCTCTGTAGCTGCTAT
AGTTGGCTGCATGTGCCAGCTTGTTGTAAAAGAAATTGATAACGGGGATGAACAGGTCAAAGCTGATGCAATAAGAATTGGCAATTATACTGATGGGCAG
TTTCCTACTGACAGCAAGGAATTTGCAAAACGAATATTTTATACTGTATTTATGGGGTCTGAGAATAGTTCTGAAGACACAAAGAAGCGGGCAAAGGAAC
TAGCGGATGAGATTGGTTCATGGCATCTGGATGTTAGCATAGATGGTGTTGTATCTGCACTGCTATCATTGTTTCAAACACTTACCGGCAAACGACCTCG
TTATAAGGTGGATGGGGGTTCTAACATTGAAAACCTAGGGCTGCAGAATATTCAAGCTCGAATCAGGATGGTGCTAGCATTTATGCTAGCCTCACTCTTG
CCTTGGGTTCACAGCAAACCAGGGTTTTACCTCGTTTTGGGTAGCTCTAATGTGGATGAAGGATTGCGTGGTTACCTAACAAAGTATGATTGCAGCTCTG
CAGATATAAATCCAATTGGAAGTATTAGTAAGCAGGACCTTCGGGCATTCTTGCGATGGGCAGCCATACATCTTGGTTACTCTTCCTTGGCAGAAATTGA
AGCAGCTCCCCCAACAGCTGAATTGGAGCCAATACGTTCCAACTACAGCCAGCTTGATGAAGTGGACATGGGAATGACATACGAGGAACTCTCAGTTTAC
GGAAGGCTGAGAAAGATTTTCCGCTGTGGGCCTGTGTCAATGTTTAAGAATCTCTGCTACAGATGGGGGTCAAGATTATCTCCATTAGAGGTGGCTGACA
AAGTGAAACACTTCTTCAAGTACTACTCCATCAATCGGCATAAAATGACCGTCTTGACACCTTCATATCATGCTGAGAGTTATTCACCTGAGGATAACAG
GTTTGATCTTCGTCAGTTCCTCTACAATGCAAGATGGCCCTATCAATTTCGCAAGATGGATGAACTTGTTAAGGAGTTGGATGGTAATGAAGTCGCATTA
GGAGAAACAAGAGACGAGGATAAGTCGAGAGTAAATGGAGTAGGAATGGGAATTGTAGCAGCAGGCTCAGGCGATCCCAAATCCGGCCTTTAA
AA sequence
>Potri.001G087400.1 pacid=42791817 polypeptide=Potri.001G087400.1.p locus=Potri.001G087400 ID=Potri.001G087400.1.v4.1 annot-version=v4.1
MRLLKVATCNLNQWAMDFDCNLKNIKESITQAKQAGAVIRLGPELEITGYGCEDHFLELDTINHGWECLKEILVGDWTDGILCSIGMPVIKGSERYNCQV
LCFNRKIIMIRPKMWLANDGNYRELRWFTAWKHKDQLVDFQLPSEIAEAISQKSVHFGYGYVQFLDTAVAAEVCEELFTPIPPHAELALNGVEVFMNASG
SHHQLRKLDVRLRAFIGATHTCGGVYMYSNHQGCDGGRLYYDGCSCVVVNGEVVAQGSQFSLRDSEVVLAQVDLDAVASLRGSISSFQEQASYKNTVSSV
LVPYKLCQPFSMQMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIDNGDEQVKADAIRIGNYTDGQ
FPTDSKEFAKRIFYTVFMGSENSSEDTKKRAKELADEIGSWHLDVSIDGVVSALLSLFQTLTGKRPRYKVDGGSNIENLGLQNIQARIRMVLAFMLASLL
PWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRAFLRWAAIHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY
GRLRKIFRCGPVSMFKNLCYRWGSRLSPLEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKMDELVKELDGNEVAL
GETRDEDKSRVNGVGMGIVAAGSGDPKSGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55090 carbon-nitrogen hydrolase fami... Potri.001G087400
[exp]
0 1
AT5G54130 Calcium-binding endonuclease/e... Potri.015G004200
[exp]
5.00 0.8241
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Potri.006G267700
[exp]
5.91 0.8421 Pt-COL1.1
AT5G42810 ATIPK1 inositol-pentakisphosphate 2-k... Potri.002G032900
[exp]
6.78 0.7739
AT5G59250 Major facilitator superfamily ... Potri.001G244100
[exp]
8.71 0.8329
AT5G19010 ATMPK16 mitogen-activated protein kina... Potri.010G029700
[exp]
9.94 0.8016 Pt-ATMPK16.1
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Potri.010G076700
[exp]
10.39 0.8285
AT5G16530 PIN5 PIN-FORMED 5, Auxin efflux car... Potri.013G087000
[exp]
10.95 0.8045 PIN9.2
Potri.007G049700
[exp]
11.22 0.8215
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G036600
[exp]
14.17 0.8287
AT4G19840 AtPP2A-1, ATPP2... phloem protein 2-A1 (.1) Potri.012G120400
[exp]
14.49 0.8050

Potri.001G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.