Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 458 / 5e-156 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 425 / 2e-143 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G15210 320 / 2e-103 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 320 / 1e-102 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G55700 305 / 6e-97 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G32290 286 / 2e-89 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT2G45880 286 / 4e-88 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 260 / 2e-78 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 251 / 2e-76 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143500 [exp] 999 / 0 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 474 / 4e-162 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.010G062900 [exp] 469 / 5e-160 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 431 / 8e-146 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 421 / 9e-142 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.017G040800 [exp] 326 / 1e-104 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 325 / 1e-104 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.008G204200 [exp] 300 / 3e-95 AT5G18670 552 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Potri.002G159300 [exp] 298 / 1e-92 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004396 [exp] 461 / 3e-157 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 445 / 5e-151 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10011035 [exp] 426 / 6e-144 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 417 / 3e-140 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 395 / 9e-132 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 372 / 2e-123 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004398 [exp] 358 / 1e-117 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 328 / 2e-104 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 324 / 9e-104 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10016615 [exp] 317 / 6e-102 AT5G55700 734 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.001G087600.1 pacid=42793299 polypeptide=Potri.001G087600.1.p locus=Potri.001G087600 ID=Potri.001G087600.1.v4.1 annot-version=v4.1 ATGGCGATCGCATCTCCATCCACACCAACTTTCTCTGCTTCCTTCTGTTGCAAACGCACTGTGTCAACTCACCTAATTCGGTTCCCTTCCACCTTGTCAC CTACACGAACTCGCCACCTCCCACCTCGCCGATTCGCGATCAGCTCGCGACTCAACTCCTCAAAATCCTGCGGCTCCGTCTATCCCGACAATGGCGGAAG CGAAGATTTCGAGCATTACGAGCTTCAACATGGATTTACTGGCCCGGTGGAGCGGCGGCGGAGGGGATCGCCAGTGTACGTGACGCTGCCGGCGGAATTG GTGGCGGAGGATGGAAAGGTGAGGAGGATTAAGGTCTTGACGGCGTCTTTGAGGGCCCTGGTGACTGCTGGAGTGGAAGGTGTGGTTATGGAGATTTGGT GGGGGATAGTGGAGAGGGAGAAGCCTAGGGTTTATAATTGGGGAGGGTATTTGGATCTTGTGGCGTTAGCAAGACGGTGTGGGTTGAAGGTTAGAGCTGT CTTGGCTTTTCATCAACGTGGCACTGGACCTGGAGATCCTTTATGGGTTTCTCTTCCTCAATGGGTGCTTGAAGAGATTGATAAAGATCCAGATATAGCA TATACTGATCGATTCGGTAGAAGAAACATGGAATACATTTCTCTTGGATGCGATATGTTTCCTGTCCTGAAGGGACGATCACCACTCCAAGCATATTCAG ATTTTATGATGAATTTCAGAGATACTTTTAGATCTTTACTTGGTGTTGTCATTACGGGAGTCCAAGTTGGCATGGGTCCTGCAGGTGAATTAAGGTACCC TTCATGTCCATCACAGAAGCTAGCATGGGCTTGGCACACACGTGAGCTTGGAGAGTTTCAGTGCTATGATAAGTATATGATTGCATCCCTGAATGCATGT GCTCATGATGCCGGAATGCGTGAATGGGGATATGGAGGCCCGATTGGTTCTGGTAATCTGATGCATGGCCCTGAGAATACTGAGTTTTTCAAAAGCAATG GTGGATCTTGGAATACCCCATTTGGGAAATTTTTTCTTCAATGGTACTCTGGGATGCTGCTGCTTCATGGCGAAAGGATATGTAGAGAAGCGAAGACCAT CTTTCAGGGCACTGAAATTGATACTTCAGCCAAAGTGGCTGGGATCCACTGGCATTATGGCATGCAATCACATCCTTCTGAGTTAACAGCTGGCTACTAC AATACTTCAAGAAGAGATGGGTACTTGCCAATTGCTCGCATGTTGGGTAGGTACGGTTTTGGTTTATGCTGCTCAGGCTTTGGAATGAGAGACGTGGAAG AAAAAAAGACAAACCCAGTCAGCAGTCCAGAGGGTTTTCTAAAACAGCTTTTATTGGCAGCTAGGGTCTGTCACATACCGATAGAAGGTGAAAATTCTAC CACTTTTTTGGAAGATGAATCGTTTGAACAGGTGCTAAAGATGTCAAAGTTCTACACATATGGTCTTGAAAGCCCCACCTTTTCTTTCAACTTTATGAGG ATGGACAGATACCTCTTTGAACAGCATAAATGGGTTCGCTTTACTCGTTTTGTGAAGCAATTGTCAGGGGCCAATATTTTTCGAGCCAGATTAGATTTTG GAGGCGATGTACAACCAACTTCAATGTCAGATGTTGTAAAAGTTAGAGCTGCGTATACATATTGTTAA
AA sequence Show only first row Show all	>Potri.001G087600.1 pacid=42793299 polypeptide=Potri.001G087600.1.p locus=Potri.001G087600 ID=Potri.001G087600.1.v4.1 annot-version=v4.1 MAIASPSTPTFSASFCCKRTVSTHLIRFPSTLSPTRTRHLPPRRFAISSRLNSSKSCGSVYPDNGGSEDFEHYELQHGFTGPVERRRRGSPVYVTLPAEL VAEDGKVRRIKVLTASLRALVTAGVEGVVMEIWWGIVEREKPRVYNWGGYLDLVALARRCGLKVRAVLAFHQRGTGPGDPLWVSLPQWVLEEIDKDPDIA YTDRFGRRNMEYISLGCDMFPVLKGRSPLQAYSDFMMNFRDTFRSLLGVVITGVQVGMGPAGELRYPSCPSQKLAWAWHTRELGEFQCYDKYMIASLNAC AHDAGMREWGYGGPIGSGNLMHGPENTEFFKSNGGSWNTPFGKFFLQWYSGMLLLHGERICREAKTIFQGTEIDTSAKVAGIHWHYGMQSHPSELTAGYY NTSRRDGYLPIARMLGRYGFGLCCSGFGMRDVEEKKTNPVSSPEGFLKQLLLAARVCHIPIEGENSTTFLEDESFEQVLKMSKFYTYGLESPTFSFNFMR MDRYLFEQHKWVRFTRFVKQLSGANIFRARLDFGGDVQPTSMSDVVKVRAAYTYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.001G087600 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.003G006300 [exp]	17.60	0.8889	HSC70.2
AT3G50790			esterase/lipase/thioesterase f...		Potri.003G146500 [exp]	21.07	0.9036
					Potri.017G154900 [exp]	29.69	0.9058
AT2G43630			unknown protein		Potri.006G123800 [exp]	46.69	0.8613
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.010G052000 [exp]	48.24	0.9066	PSBY.2
AT4G21860		MSRB2	methionine sulfoxide reductase...		Potri.001G286500 [exp]	52.91	0.9058
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.009G140500 [exp]	83.78	0.8979	Pt-CAO.3
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	102.47	0.8816
AT5G51220			ubiquinol-cytochrome C chapero...		Potri.003G151600 [exp]	106.98	0.8779
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Potri.002G126800 [exp]	107.48	0.8783

Compare expression of checked genes

Potri.001G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.