Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24020 991 / 0 NLP7 NIN like protein 7 (.1) AT1G64530 792 / 0 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 416 / 4e-131 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 406 / 4e-127 NLP4 Plant regulator RWP-RK family protein (.1.2) AT3G59580 385 / 6e-119 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 370 / 8e-113 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G35270 313 / 2e-91 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 281 / 1e-82 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 225 / 7e-62 NLP3 Plant regulator RWP-RK family protein (.1) AT5G66990 55 / 9e-08 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143000 [exp] 1558 / 0 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 468 / 1e-149 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 451 / 4e-143 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 393 / 1e-120 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 383 / 6e-117 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166400 [exp] 380 / 3e-116 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 379 / 7e-116 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 320 / 6e-94 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 311 / 3e-91 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003199 [exp] 1094 / 0 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 682 / 0 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10001811 [exp] 622 / 0 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 422 / 9e-133 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10001810 [exp] 407 / 2e-132 AT4G24020 319 / 6e-100 NIN like protein 7 (.1) Lus10016018 [exp] 418 / 2e-131 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10008143 [exp] 412 / 2e-128 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 392 / 3e-121 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014428 [exp] 388 / 1e-120 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 376 / 4e-116 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.001G087900.1 pacid=42791468 polypeptide=Potri.001G087900.1.p locus=Potri.001G087900 ID=Potri.001G087900.1.v4.1 annot-version=v4.1 ATGCCAGAACCAACTGAAGTTGGAGGAGGGGGTGAGTCCGAAGGAAGGAAGTCAATGGAGTTGGATCTTGATCTTGATAGCTCTTGGCCTTTAGATCAGA TCTCTTTTATTTCTTCAAACCCCATGTCAACTTTTCTTATTTCTTCTTCTAATGAACAGCCTTGTTCTCCCCTCTGGGCTTTCTCTGATGCTGCTGATGA TAGACTTCTTGCTGCTGCTGCTGGTGGTGGTCAGGCTTCCTCTTCTTTTGTTGGTGGCCTTCGCTTGTCTGATAATCCTATCGTACTCACATGTAATCCA AATTCGGTAACTGAAAGCAAAGGGGAAAATGATGATAACAGTAAACTTCCTTCTCCGTTTTTGGGATTAATGCCTATTGACAACCCTGATGGGTATTGTA TAATTAAAGAGAGAATGACACGGGCCCTGAGACATTTCAAAGAATCAACTGAACAACATATTCTAGCTCAGGTTTGGGCACCTGTGAAGAATGGGGGTCG ATATGCGTTGACAACTTCAGGGCAACCCTTCGTTATTGATCCTCATAGTAATGGACTTCATCAGTATAGGATGGTCTCTCTTATGTATAAGTTCTCTGTG GACGGAGAGAGTGATGGAGAGCTTGGGCTACCTGGCCGTGTTTTCAGACAAAAATTACCGGAATGGACTCCCAATGTTCAGTATTACTCCAGCAAGGAGT ATTCACGGCTTGATCATGCTCTACACTACAATGTTCGGGGAACCGTGGCTTTGCCAGTCTTCGAACCTTCTGGACAGTCTTGTGTCGGTGTGGTTGAACT CATTATGACTTCACAGAAGATCAACTATGCACCCGAGGTTGATAAAGTCTGCAAGGCACTTGAGGCAGTAGATTTGAAAAGTTCAGAGATATTGGACCCT CCAAGCACACAGATTTGTAATGAAGGTCGCCAAAATGCACTGGCTGAAATTTTGGAGATATTGACAATGGTATGTGAAACTCACAAATTGCCTTTGGCCC AGACATGGGTTCCATGCATGCATCGCAGTGTTCTGGCCTATGGCGGTGGTCTGAAGAAGAGCTGTACCAGCTTTGATGGCAGTTGCAATGGGCAAGTCTG CATGTCCACAACTGATGTGGCATTCTATGTAGTGGATGCTCACATGTGGGGTTTTAGGGAGGCCTGTCTTGAGCATCACTTACAAAAGGGTCAAGGGGTT GCTGGGAGGGCATTTTTTTCCCACAACCTATGCTTCTGCCCAGATATTACCCAGTTTTGCAAGACTGAGTATCCTCTAGTACATTATGCACGCATGTTTG GATTAACCAGCTGTTTTGCAATCTGCTTGCGGAGCAGTTATACTGGAGATGATGATTACATCCTTGAATTTTTTCTGCCCCCTAGCTTCACAGACAGTCG TGAATGGAAGACTTTGTTAGGCTCCATATTGGCAATAATGAAGCAGGATTTCCAGAGTCTCCAGGTTGCTTCTGGGATGGACCTTGAAGAGGAGGAAGGA TTTGTAGAGATGATTCAAGTTTCTACTAATGGGAGACTTGATTTGAGACTTGAATGCATTCAGATACCCCAATCTACAAAATCTCCCCCAGATGACAATG CGTTGCTAAATGGACCGATTGTACAAATTTATCCAGAAAAGAAACAATTAATGTTGGACTTGGATGTCATAAAAAATGGAGGCAGTGCTGTTCAAGCAGA TGTCAGGCAAACTCATGCTTCTCTTACAGAGAAAGAGACAAAAAAGCCAAAAGAGAGGAAACGTGGAAAGGCAGAGAAAATGATTAGTCTAGAGGTTCTC CAACAATATTTTACTGGAAGTCTGAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATTTGCAGGCAGCATGGGATATCTCGCT GGCCATCTCGCAAGATCAAGAAGGTTAATCGTTCCCTGTCTAAGCTTAAGCGGGTAATTGAATCAGTCCAAGGCACTGAAGGAGCATTTTCTACAAGTTC TCTTCCTGTCGCTGTTGGTACCATTTCTTGGCCTCCCAATTTGAATGGGAGAAATCAACAGAACTCACCAAACTCTAAATCCCCTGAACATCATGGTGAC AAGAATGGATCACCCACCTGTAGAACGCCAGGAAGCGATGTAAAGGCTGGTTTCGAAGATCAATTGCTAGGATGTAGAAAATTGAGTCTAGAGGAACTCA CTGTGCAAAATAGGTTTTCACCAGAGTTAGGTACAGGCTCAAACAGATCCAAAACAAGGGGTGGTTCGAGGGGTGAGAGTGCAGGAACTCCTACTTCTCA TGGCTCATGCCAAGGTTGCCCAGAAAATGAAAGTGCACCTGCAAAGGACCCATCTGTTTCTCCTGTCCATGAGCGATGCATTAAAGCAGGGGGGTCACCT GAACTGGTTCTTCAACAAACCAGGGAACTAAATCTGTCAGCTGCTTACTCAATACCTGATGCTTTTTTCGCAACGGAAGCTCAAGAACAATTTGGTGGAA TGCTAATAGAGGATACTGGAAGTTCGAAAGATTTGAGCAACCTTTGTCCTGCCATGGCAGATGCTATTGTGGATGAGCGATTTCCAGAATCTAAATGGAC AGATCCTCCAAGTTCAGATATAAATCCCACACAAATGATTGCTGCTCTTTCGATCGCAATGCCGCATGTAACATCTAGGCAAGAAATGAATAGCGTAACC ATAAAGGCAACATATAGGGAAGACATGATAAGGTTCCGAATCTCTCTGAGTTCTGGGATCGCGAAGTTAAAAGAGGAAGTGGCCAAGAGGCTGAGGTTGG AGGTGGGTACATTTGACATCAAGTATCTGGATGATGATCATGAATGGATTTTGATTGCCCGTGATGCTGACTTGCATGAGTGTATGGATGTTTCAAGATC ATCAAATAGTAATATGATCAGGGTATCAGTTCATGATGCAAATGCCAATCTTGGGAGCTCCTGTGAGAGCACTTGGGAGATATGA
AA sequence Show only first row Show all	>Potri.001G087900.1 pacid=42791468 polypeptide=Potri.001G087900.1.p locus=Potri.001G087900 ID=Potri.001G087900.1.v4.1 annot-version=v4.1 MPEPTEVGGGGESEGRKSMELDLDLDSSWPLDQISFISSNPMSTFLISSSNEQPCSPLWAFSDAADDRLLAAAAGGGQASSSFVGGLRLSDNPIVLTCNP NSVTESKGENDDNSKLPSPFLGLMPIDNPDGYCIIKERMTRALRHFKESTEQHILAQVWAPVKNGGRYALTTSGQPFVIDPHSNGLHQYRMVSLMYKFSV DGESDGELGLPGRVFRQKLPEWTPNVQYYSSKEYSRLDHALHYNVRGTVALPVFEPSGQSCVGVVELIMTSQKINYAPEVDKVCKALEAVDLKSSEILDP PSTQICNEGRQNALAEILEILTMVCETHKLPLAQTWVPCMHRSVLAYGGGLKKSCTSFDGSCNGQVCMSTTDVAFYVVDAHMWGFREACLEHHLQKGQGV AGRAFFSHNLCFCPDITQFCKTEYPLVHYARMFGLTSCFAICLRSSYTGDDDYILEFFLPPSFTDSREWKTLLGSILAIMKQDFQSLQVASGMDLEEEEG FVEMIQVSTNGRLDLRLECIQIPQSTKSPPDDNALLNGPIVQIYPEKKQLMLDLDVIKNGGSAVQADVRQTHASLTEKETKKPKERKRGKAEKMISLEVL QQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKRVIESVQGTEGAFSTSSLPVAVGTISWPPNLNGRNQQNSPNSKSPEHHGD KNGSPTCRTPGSDVKAGFEDQLLGCRKLSLEELTVQNRFSPELGTGSNRSKTRGGSRGESAGTPTSHGSCQGCPENESAPAKDPSVSPVHERCIKAGGSP ELVLQQTRELNLSAAYSIPDAFFATEAQEQFGGMLIEDTGSSKDLSNLCPAMADAIVDERFPESKWTDPPSSDINPTQMIAALSIAMPHVTSRQEMNSVT IKATYREDMIRFRISLSSGIAKLKEEVAKRLRLEVGTFDIKYLDDDHEWILIARDADLHECMDVSRSSNSNMIRVSVHDANANLGSSCESTWEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24020		NLP7	NIN like protein 7 (.1)		Potri.001G087900 [exp]	0	1
AT5G01950			Leucine-rich repeat protein ki...		Potri.006G111100 [exp]	1.00	0.9310
AT1G22540			Major facilitator superfamily ...		Potri.013G106500 [exp]	6.78	0.8572
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	11.48	0.8642
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.004G205500 [exp]	13.19	0.8808	Pt-NIN.1
AT2G31090			unknown protein		Potri.011G063900 [exp]	20.63	0.8838
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Potri.009G153600 [exp]	26.38	0.8397
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	27.38	0.8790
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G179000 [exp]	30.33	0.8646
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.007G020200 [exp]	39.50	0.8676
AT3G59710			NAD(P)-binding Rossmann-fold s...		Potri.013G127700 [exp]	41.27	0.8679

Compare expression of checked genes

Potri.001G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.