Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HEN3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63610 680 / 0 HEN3, CDKE;1, CDK8, ATCDK8 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) AT1G67580 249 / 1e-74 CDKG;2 Protein kinase superfamily protein (.1.2) AT3G48750 224 / 1e-69 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 224 / 1e-69 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 219 / 1e-67 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G66750 219 / 3e-67 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G18040 219 / 9e-67 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 218 / 2e-66 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT2G38620 212 / 4e-65 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 209 / 7e-64 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142900 [exp] 822 / 0 AT5G63610 676 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.010G056900 [exp] 246 / 2e-73 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G133500 [exp] 231 / 1e-72 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.008G178200 [exp] 238 / 9e-71 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G052100 [exp] 224 / 2e-68 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 224 / 3e-68 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.016G142800 [exp] 216 / 1e-66 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.015G092100 [exp] 224 / 9e-66 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 221 / 5e-65 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032422 [exp] 705 / 0 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10023050 [exp] 702 / 0 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10015816 [exp] 247 / 8e-74 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 247 / 9e-74 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040530 [exp] 228 / 1e-69 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 224 / 2e-68 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10021611 [exp] 207 / 3e-63 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 207 / 7e-63 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10026790 [exp] 202 / 4e-59 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 200 / 2e-58 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G088000.2 pacid=42790762 polypeptide=Potri.001G088000.2.p locus=Potri.001G088000 ID=Potri.001G088000.2.v4.1 annot-version=v4.1 ATGGGAGACGGCAATAATAGAAGCAACAACAACAGTGAAAAGCCAGAGTGGCTGCAACAGTACAATCTTATTGGCAAGATTGGTGAAGGCACTTATGGTC TTGTATTCCTAGCAAAAACCAAGTCTCCTGCAAATTGTGGAAAGTCCATTGCCATCAAGAAATTCAAGCAGTCCAAGGATGGTGATGGTGTCTCTCCCAC TGCCATCCGTGAAATCATGTTACTTAGGGAAATTACTCATGAGAATGTTGTGAAGCTTGTGAATGTGCACATCAATCATGCTGACATGTCGCTGTATCTG GCTTTTGATTATGCTGAGCATGATCTTTATGAAATCATCAGGCATCATAGAGACAAGGGTAACACTATGATCAATCAGTACACTGTTAAATCATTGCTCT GGCAGCTACTCAATGGACTGAACTATCTGCACAGTAACTGGATCATACATCGAGATCTAAAGCCATCAAATATCTTAGTTATGGGCGAGGGAGAGGAACA CGGGGTCGTCAAAATTGCTGATTTTGGACTGGCAAGAATATATCAAGCTCCCTTGAAGGCTTTGTCTGATAATGGTGTTGTGGTAACCATTTGGTATCGT GCACCTGAGTTGCTTCTGGGGGCTAAGCACTACACAAGTGCTGTTGACATGTGGGCTCTTGGATGCATTTTTGCTGAACTTTTGACTTTGAAGCCACTTT TTCAAGGGGCAGAAGCCAAATCGACATCAATTCCTTTCCAGATCGATCAACTTGACAAGATATTTAAGGTCTTGGGCCATCCTACACTAGAAAAATGGCC AACACTTGCAAGTCTTCCGCACTGGCATAATGACGTGCAGCATATCCAAGAGCACAAGTATGAGAATACTGGACTACATGGTGTTGTGCCTCTCTCTCCA AAAAGTGCTTCATTTGACCTTCTATCTAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCTGCACAAGCTATAGAGCATGATTATTTTCGTAGTG AACCTCTACCTGGACGGAATGCCCTGGTTCCCTCTCAACCTGGAGAGAAGGTCATCAATTATCCTACTCGTCCGGTAGATACAAATACAGATTTTGAAGG AACAACTAGTCTTCAACCTCCACAGCCTGTCTCATCTGGAAATGCGGTTTCTGGAGGCATGCCAGGTGCTCATGGAATTAACAGCAGATCTGCACCTCGA CCAATGTCTGTGGGCATGCAGAGAATGCAATCTCAGGGCATGGCAGCTTATAATCTCTCTTCTCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTAACA TCCCTATGCCACGTGGGGTTGCCCAGCCCCATCAGCAGCATCACCTGAGAAGGAAAGACCCACCTGGAACGGGGACTGGATACCCTCCCCAACAAAAATC AAGACGCTAA
AA sequence Show only first row Show all	>Potri.001G088000.2 pacid=42790762 polypeptide=Potri.001G088000.2.p locus=Potri.001G088000 ID=Potri.001G088000.2.v4.1 annot-version=v4.1 MGDGNNRSNNNSEKPEWLQQYNLIGKIGEGTYGLVFLAKTKSPANCGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYL AFDYAEHDLYEIIRHHRDKGNTMINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKALSDNGVVVTIWYR APELLLGAKHYTSAVDMWALGCIFAELLTLKPLFQGAEAKSTSIPFQIDQLDKIFKVLGHPTLEKWPTLASLPHWHNDVQHIQEHKYENTGLHGVVPLSP KSASFDLLSKMLEYDPRKRITAAQAIEHDYFRSEPLPGRNALVPSQPGEKVINYPTRPVDTNTDFEGTTSLQPPQPVSSGNAVSGGMPGAHGINSRSAPR PMSVGMQRMQSQGMAAYNLSSQAGMGGGMNPGNIPMPRGVAQPHQQHHLRRKDPPGTGTGYPPQQKSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.001G088000 [exp]	0	1	Pt-HEN3.1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.012G064500 [exp]	1.41	0.7195
AT4G35870			early-responsive to dehydratio...		Potri.005G108600 [exp]	3.16	0.7449
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150100 [exp]	28.10	0.7090
AT4G21700			Protein of unknown function (D...		Potri.011G052500 [exp]	29.12	0.7093
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Potri.008G168800 [exp]	38.53	0.6911
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Potri.019G078700 [exp]	47.59	0.6198
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	71.29	0.5842
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	93.72	0.6387
AT4G35140			Transducin/WD40 repeat-like su...		Potri.004G178700 [exp]	96.07	0.6357
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Potri.005G071000 [exp]	112.24	0.6561

Compare expression of checked genes

Potri.001G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.