Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23980 710 / 0 ARF ARF9 auxin response factor 9 (.1.2) AT1G59750 572 / 0 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT1G35540 536 / 0 ARF ARF14 auxin response factor 14 (.1) AT1G34390 533 / 0 ARF ARF22 auxin response factor 22 (.1) AT1G34310 523 / 8e-179 ARF ARF12 auxin response factor 12 (.1) AT1G35520 520 / 1e-177 ARF ARF15 auxin response factor 15 (.1) AT1G34410 520 / 1e-177 ARF ARF21 auxin response factor 21 (.1) AT2G46530 510 / 9e-174 ARF ARF11 auxin response factor 11 (.1.2.3) AT1G35240 501 / 1e-170 ARF ARF20 auxin response factor 20 (.1) AT3G61830 500 / 8e-170 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142100 [exp] 1155 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 779 / 0 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 769 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 597 / 0 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 596 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G163600 [exp] 541 / 0 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 522 / 8e-176 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 478 / 6e-158 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 471 / 1e-155 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023058 [exp] 924 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10007440 [exp] 605 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 593 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032413 [exp] 501 / 2e-174 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10043200 [exp] 477 / 1e-157 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 477 / 1e-157 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10030240 [exp] 377 / 1e-123 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10041340 [exp] 352 / 9e-114 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10005264 [exp] 339 / 1e-106 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 337 / 6e-106 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.001G088600.3 pacid=42788654 polypeptide=Potri.001G088600.3.p locus=Potri.001G088600 ID=Potri.001G088600.3.v4.1 annot-version=v4.1 ATGATGGCTATGAATAGAGGAATAGGAGGAGGAGGAGGAGGGGGCTCGTTATCGCAGGGGAATAGTGAAGGTTGTGGAGGAGATGATCTGTATACGGAGT TATGGAAGGCATGTGCCGGTCCACTGGTGGATGTTCCCAAGCGAGGAGAAAGAGTGTTTTATTTTCCTCAAGGTCATATGGAACAGTTGGAGGCATCAAC AAATCAGGAATTGAATCAGAGGGTTCCTTTGTTTAATCTGCCTTCGAAGATTCTCTGTCGTGTTATTCATACTCAGCTGCTGGCAGAACAAGATACAGAT GAGGTTTATGCACAGATTACTTTAATTCCTGAATCAGATCAAATTGAACCTACGAGTCCTGATTCAAGTTCATCTGAGCCTCCAAGACCTACAGTTCACT CCTTCTGCAAGGTGTTAACTGCCTCTGATACGAGCACCCATGGTGGATTTTCTGTTCTTCGTAAACATGCCACTGAATGCCTTCCTCCGCTGGATATGAC CCAACCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTACATGGTTATGAATGGCGATTTAAGCATATTTTCAGAGGTCAGCCAAGGAGGCACTTGCTC ACCACAGGGTGGAGTACATTTGTTACCTCCAAGAGATTAGTTGCTGGGGATTCATTTGTCTTCCTCAGAGGGGAGAATGGGGAATTGCGTGTTGGGGTGA GGCGTGTTGCTTGCCAACAGAGCAGCATGCCATCATCTGTGATTTCCAGTCAGAGTATGCACCTTGGAGTTCTTGCAACAGCTTCTCATGCTGTTTCAAC CCTAACTCTCTTTGTGGTATATTATAAGCCGAGGACGAGCCAGTTCATCATAAGCCTGAACAAATATTTAGAGGCTGTTAGCAATAAGTTTGTAGTTGGG ATGAGATTCAAGATGAGGTTTGAAGGTGAAGATTCTCCTGACAGAAGGTTTTCGGGCACGATTGTTGGGGTTGAAGATTTTTCTCCGCACTGGAATGATT CTAAATGGCGGTCGTTGAAAGTTCAATGGGATGAACCTGCTCCTATTCCAAGACCCGATAGGGTGTCACCATGGGAGATAGAACCCTGTGTGGCTTCCGT GCCAACAAATCTGTCTCAACCAGTTACACAAAAAAATAAAAGGCCCCGGCCTCCATTTGAAATTCCAGCTCTTGATTTATCTTCAACTGCATCAACTCGG AATTCTGGATTGACACAGTCCCATGATTTAACTCAACTGAGTGTTACTGGTGAAGGCAAAAGTTATGAAAATCACGTCATGTGGCATCAAAAACAGACTG ATGTTAATGGCCATAGCAACTCTATGTCAAGGACTCAAACTGAAGGGGGCTGGTTAGCTTCTCCCCATGTTATTGTTTCTCAGCATCCGTTTCAGGATGC CATGGAGGATAGCAAAAGTGTTTCCCCGTGGCCTGTATTCTCAGGCTATTCAACTCCCCTCTCATCCAAGTCAAAGAATGACGCAATCCTTGACCCATCT GATAAGGGGAGGAAATCTGAGGTGCCTACTAGTTATCGATTATTTGGCATTGATCTTGTAAATCATTCCTCAAGTTCAACTCCTATTGAAGTGCCTGCAC AGCTGATGAGTATATGTAGTGGTGCCACTGAAGGACATGTTCTAGGTGCCCTGTCTGCAGTTGATTCAGACCAAAAATCTGAAGTATCCAAGGAACAGAA ACCAGAACAGTTACAGAAATCACCAAAAGAAATTCAGAGCAAGCAAAGTTCTACTTCCACTAGAAGTCGCACGAAGGTTCAAATGCAGGGGATTGCTGTT GGTCGGGCCGTGGACTTGACCATGCTTAAGGGGTACAGTCAGCTTATAGATGAGCTGGAGCAGTTATTTGACATTAAGGGACAGCTTCACCCTCGGGATA AGTGGGAAATCGTCTATACTGATGATGAAGGTGATATGATGCTTGTCGGTGACGATCCGTGGCCTGAGTTCTGTAACATGGTGAGAAGAATCTACATATG CTCAAGTCAGGATGTGAAAAGGATGGGTCCAGGAAGCAAACTTCCCATGCTACCCATTAAAGGTGAAGGGACTGTATTAAGCTCAGATTCAGCAGAGAAC TGA
AA sequence Show only first row Show all	>Potri.001G088600.3 pacid=42788654 polypeptide=Potri.001G088600.3.p locus=Potri.001G088600 ID=Potri.001G088600.3.v4.1 annot-version=v4.1 MMAMNRGIGGGGGGGSLSQGNSEGCGGDDLYTELWKACAGPLVDVPKRGERVFYFPQGHMEQLEASTNQELNQRVPLFNLPSKILCRVIHTQLLAEQDTD EVYAQITLIPESDQIEPTSPDSSSSEPPRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLL TTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRVACQQSSMPSSVISSQSMHLGVLATASHAVSTLTLFVVYYKPRTSQFIISLNKYLEAVSNKFVVG MRFKMRFEGEDSPDRRFSGTIVGVEDFSPHWNDSKWRSLKVQWDEPAPIPRPDRVSPWEIEPCVASVPTNLSQPVTQKNKRPRPPFEIPALDLSSTASTR NSGLTQSHDLTQLSVTGEGKSYENHVMWHQKQTDVNGHSNSMSRTQTEGGWLASPHVIVSQHPFQDAMEDSKSVSPWPVFSGYSTPLSSKSKNDAILDPS DKGRKSEVPTSYRLFGIDLVNHSSSSTPIEVPAQLMSICSGATEGHVLGALSAVDSDQKSEVSKEQKPEQLQKSPKEIQSKQSSTSTRSRTKVQMQGIAV GRAVDLTMLKGYSQLIDELEQLFDIKGQLHPRDKWEIVYTDDEGDMMLVGDDPWPEFCNMVRRIYICSSQDVKRMGPGSKLPMLPIKGEGTVLSSDSAEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	0	1
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	1.00	0.9100
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	2.00	0.8991	HAP2.6
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	2.44	0.8971
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	6.00	0.8283
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	6.32	0.8871
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.003G157100 [exp]	6.48	0.8416
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	8.36	0.8554
AT1G07630		PLL5	pol-like 5 (.1)		Potri.006G085000 [exp]	9.38	0.8661
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.003G202100 [exp]	9.69	0.8238
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	9.79	0.8376

Compare expression of checked genes

Potri.001G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.