Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46290 660 / 0 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 447 / 3e-153 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT2G04540 243 / 9e-75 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142000 [exp] 890 / 0 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 658 / 0 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 655 / 0 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.006G138000 [exp] 457 / 4e-157 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 455 / 5e-156 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.002G219500 [exp] 233 / 4e-71 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003195 [exp] 769 / 0 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 755 / 0 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10040883 [exp] 654 / 0 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 650 / 0 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 618 / 0 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10004935 [exp] 485 / 1e-170 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 454 / 1e-155 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 415 / 2e-141 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10014622 [exp] 243 / 1e-74 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 229 / 1e-68 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00109 [poplar] [flax] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02801 [poplar] [flax] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G088700.1 pacid=42793340 polypeptide=Potri.001G088700.1.p locus=Potri.001G088700 ID=Potri.001G088700.1.v4.1 annot-version=v4.1 ATGGCAGGCATTGCTGGTGCAGCTTGTTCTTCTAATGTACTCTTTGGAAGCAGAGAAGTAGGGAGCGATGGAGCTTCTCTGGCACAGTACAGGGGGCTTA GACCAGTTGAAAACATGCAACTGGCTCCAACTGGGAGGAGGCCAAGTGGGTCCATTTCTACTTCAGCTTCAAAATCAAGAACAATTAGAGCCATGGTATC TCAAACTGTTTCAGCTCCCAAGCGTGAAAAAGATCCCAAAAAACGAGTTGTCATTACAGGAATGGGACTAGTCTCAGTTTTTGGTAGTGGCATCGATACA TTCTATGACAAGCTCCTGGAAGGAGAGAGTGGGATCAGCCTAATTGATAGGTTTGACGCTTCGAGTTTCTCTGTTCGTTTCGCTGGTCAGATTCGTGATT TTTCTTCCAAAGGATACATTGATGGTAAAAATGATCGCCGTCTTGATGATTGCTGGAGGTACTGTCTGGTTGCTGGCAAGAGGGCCCTTGAAGATGCCAA CCTTGGCTCTGAAGTGCTTGAAAATATGGACAGAACAAGAATTGGGGTGCTGGTGGGAACAGGCATGGGAGGCTTAACCGCTTTTAGCAATGGAGTTGAA TCTCTTGTCCAGAAGGGATATAAGAAAATGTCTCCATTCTTCATTCCTTATTCCATCACCAACATGGGTTCAGCATTGTTAGCTATAGATACAGGATTAA TGGGCCCTAATTACTCCATCTCAACTGCTTGTGCGACTGCAAATTACTGCTTCTACTCGGCTGCTAATCACATTAGAAGAGGTGAAGCAGATATCATGGT AGCTGGGGGAACAGAGGCTTCAGTCATTCCTGCTGGTGTTGGTGGTTTTATAGCTTGCAGAGCACTGTCTCAAAGAAATGAAGACCCTAAGAAAGCTTCA AGGCCTTGGGACAAGGATCGTGATGGTTTTGTCATGGGTGAAGGCTCTGGAGTGCTGATAATGGAGAGCTTAGAGCATGCAATGAAAAGAGGAGCTAATA TAATAGCAGAATATTTAGGAGGTGCTGTGACTTGTGATGCTCATCACATGACAGATCCCCGTTCAGATGGCCTCGGAGTTTCAACTTGCATAGCCAAAAG TTTGGAAGATTCCGGAGTTTCCCCTGAGGAGGTGAACTATGTTAATGCTCATGCAACATCAACACTAGCAGGGGATTTGGCTGAGGTTAATGCAATCAAG AAAGTCTTTAAGAACACTTCTGAGATCAAGATGAATGGGACTAAGTCAATGATTGGACATGGTCTTGGTGCTGCTGGTGCATTAGAAGCCATAGCAACTA TAAAAGCAATCAACACTGGATGGCTTCACCCAACTATCAATCAAGATAATATTGAGCTTGATGTTACAATTGACACTGTTCCCAATGTGAAGAAGCAACA TGAAGTTAATGTTGGTATCTCAAATTCATTTGGCTTTGGAGGACACAATTCTGTTGTCGTTTTCGCTCCCTTCACAGCCTAA
AA sequence Show only first row Show all	>Potri.001G088700.1 pacid=42793340 polypeptide=Potri.001G088700.1.p locus=Potri.001G088700 ID=Potri.001G088700.1.v4.1 annot-version=v4.1 MAGIAGAACSSNVLFGSREVGSDGASLAQYRGLRPVENMQLAPTGRRPSGSISTSASKSRTIRAMVSQTVSAPKREKDPKKRVVITGMGLVSVFGSGIDT FYDKLLEGESGISLIDRFDASSFSVRFAGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGKRALEDANLGSEVLENMDRTRIGVLVGTGMGGLTAFSNGVE SLVQKGYKKMSPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYSAANHIRRGEADIMVAGGTEASVIPAGVGGFIACRALSQRNEDPKKAS RPWDKDRDGFVMGEGSGVLIMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSTCIAKSLEDSGVSPEEVNYVNAHATSTLAGDLAEVNAIK KVFKNTSEIKMNGTKSMIGHGLGAAGALEAIATIKAINTGWLHPTINQDNIELDVTIDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.001G088700 [exp]	0	1
					Potri.018G122600 [exp]	5.74	0.9234
AT2G18550	HD	HB-2, ATHB21	homeobox-2, homeobox protein 2...		Potri.005G126100 [exp]	6.48	0.9155
AT3G25600			Calcium-binding EF-hand family...		Potri.010G132800 [exp]	10.77	0.8539
					Potri.018G119400 [exp]	14.69	0.9189
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.014G058600 [exp]	16.97	0.8999
					Potri.002G101101 [exp]	25.03	0.8918
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.009G092900 [exp]	29.94	0.8777
AT1G47710			Serine protease inhibitor (SER...		Potri.017G100900 [exp]	36.46	0.9071
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Potri.003G184200 [exp]	36.63	0.8620
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	41.49	0.8831

Compare expression of checked genes

Potri.001G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.