Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42050 290 / 1e-95 DCD (Development and Cell Death) domain protein (.1) AT3G27090 273 / 5e-90 DCD (Development and Cell Death) domain protein (.1) AT3G11000 99 / 1e-22 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G01660 99 / 2e-22 unknown protein AT5G61910 95 / 5e-21 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G35140 85 / 2e-17 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT2G32910 84 / 2e-17 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141900 [exp] 596 / 0 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 269 / 3e-88 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1) Potri.001G330300 [exp] 267 / 2e-87 AT3G27090 424 / 6e-151 DCD (Development and Cell Death) domain protein (.1) Potri.019G066100 [exp] 242 / 2e-78 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1) Potri.008G074200 [exp] 112 / 1e-26 AT5G01660 488 / 2e-164 unknown protein Potri.016G127600 [exp] 111 / 2e-26 AT5G01660 628 / 0.0 unknown protein Potri.001G136300 [exp] 95 / 2e-21 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G122300 [exp] 84 / 5e-17 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.005G043100 [exp] 78 / 2e-15 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023059 [exp] 299 / 5e-99 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 297 / 2e-98 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 268 / 1e-87 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 268 / 1e-87 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10012220 [exp] 115 / 4e-28 AT5G01660 224 / 1e-66 unknown protein Lus10018307 [exp] 109 / 2e-25 AT5G01660 276 / 3e-82 unknown protein Lus10017137 [exp] 89 / 1e-18 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018316 [exp] 83 / 7e-17 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10032534 [exp] 81 / 2e-16 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10001728 [exp] 73 / 1e-13 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.001G088800.3 pacid=42788103 polypeptide=Potri.001G088800.3.p locus=Potri.001G088800 ID=Potri.001G088800.3.v4.1 annot-version=v4.1 ATGGAGAATAACCAGCAATCATTTTATCAGTTCAGTGATCAGCTCAGGGTGCAGACATCAAATTTAGCTAATCTGTCACTCAATGATTCTATATGGAGCA ATTCATACGGGTCAAAGAGGCCAGATGAAAGGAGGAATTTTGATATCAGAGTTGGTGGTGAAGTTAACAATTTGAAGCAAAAAGGGTCTGATTTGAATAG TTTCAGTGATGGATGGAATCCTATTAATGATATTAAGCAGAAAGGTTCTGGTTTGAATCTATTCAATGATGGGTGGAACTCTGTTAATGATCTGAAGCCG AAAGGGTCTAACTTGAATCTGTTCGATGATGGGTGGAGTTCTGTCAATGATTTGAAGCCGAAAGGGTCTAACTTGAATGTGTTCAGTGACGGTTACAATC TGAAGCCAAAAGGTTCTGACTTGAATGTGTTCAATGATGGATGGAAGATGGGGTCTAGTGCTAACAATTATGGGGTCAGTCCAATTGGACCTATTGGTCA CTTTGTTGGTGGATCTCAAAAAAATATTGGGATCAATGGAGGTTTCAATAAAGGGATCTATTCAAAGAACAATAATATCCATAACAGTAACGTTAATGTT AGTGTGAAGGGTAACAAGAACAAGGGAGATGATGATTTTGGAAGCAAGAGTAGCAAAAAGAATAGCAGCAAGAAGAGTAATAGTAATGAAAATAATGATA GTAAGAGTGCTGCTGATAAGAGGTTTAAGACACTGCCACCATCTGAGTCTTTGCCTAGGTATGAAACAATTGGTGGATATATCTTTGTCTGCAACAATGA TACCATGGCAGAGAATCTCAAGAGAGAGCTTTTTGGCTTGCCTCCCCGATACCGCGATTCCGTGAGGCAGATCACTCCAGGCTTGCCCCTTTTCCTCTAC AACTACTCCACTCATCAACTCCATGGAGTTTTTGAGGCTGCAAGTTTTGGAGGAACAAACATCGATCCCGCAGCCTGGGAAGACAAGAAATGTCCCGGCG AATCACGCTTCCCTGCTCAGGTGAGAGTTATGACAAGGAAAATCTGTGCGCCACTTGAAGAGGACTCTTTCCGGCCAATTCTCCATCACTACGATGGCCC CAAGTTCCGCCTTGAACTCAACATTCCAGAGGCACTGTCTCTCTTGGACATCTTTGAAGAACAAAACCCTTGA
AA sequence Show only first row Show all	>Potri.001G088800.3 pacid=42788103 polypeptide=Potri.001G088800.3.p locus=Potri.001G088800 ID=Potri.001G088800.3.v4.1 annot-version=v4.1 MENNQQSFYQFSDQLRVQTSNLANLSLNDSIWSNSYGSKRPDERRNFDIRVGGEVNNLKQKGSDLNSFSDGWNPINDIKQKGSGLNLFNDGWNSVNDLKP KGSNLNLFDDGWSSVNDLKPKGSNLNVFSDGYNLKPKGSDLNVFNDGWKMGSSANNYGVSPIGPIGHFVGGSQKNIGINGGFNKGIYSKNNNIHNSNVNV SVKGNKNKGDDDFGSKSSKKNSSKKSNSNENNDSKSAADKRFKTLPPSESLPRYETIGGYIFVCNNDTMAENLKRELFGLPPRYRDSVRQITPGLPLFLY NYSTHQLHGVFEAASFGGTNIDPAAWEDKKCPGESRFPAQVRVMTRKICAPLEEDSFRPILHHYDGPKFRLELNIPEALSLLDIFEEQNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42050			DCD (Development and Cell Deat...		Potri.001G088800 [exp]	0	1
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	1.41	0.8549
AT2G27580			A20/AN1-like zinc finger famil...		Potri.009G144100 [exp]	3.87	0.7812
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.011G071400 [exp]	6.92	0.7889
AT2G40270			Protein kinase family protein ...		Potri.008G072100 [exp]	17.32	0.7309
AT1G23710			Protein of unknown function (D...		Potri.015G076400 [exp]	21.33	0.7109
AT1G27100			Actin cross-linking protein (....		Potri.010G035100 [exp]	21.72	0.7736
AT3G59430			unknown protein		Potri.017G029800 [exp]	24.37	0.7380
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Potri.012G006100 [exp]	28.24	0.7445	TTG1.2
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.016G097000 [exp]	33.04	0.7361
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	37.73	0.7553

Compare expression of checked genes

Potri.001G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.