Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64500 240 / 5e-77 Glutaredoxin family protein (.1) AT5G06470 121 / 2e-32 Glutaredoxin family protein (.1) AT5G01420 114 / 9e-29 Glutaredoxin family protein (.1) AT5G03870 111 / 1e-27 Glutaredoxin family protein (.1) AT3G11773 102 / 3e-26 Thioredoxin superfamily protein (.1.2) AT4G10630 105 / 1e-25 Glutaredoxin family protein (.1) AT3G57070 100 / 9e-24 Glutaredoxin family protein (.1) AT1G32760 98 / 2e-23 Glutaredoxin family protein (.1) AT2G41330 98 / 9e-23 Glutaredoxin family protein (.1) AT5G13810 96 / 9e-23 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141800 [exp] 481 / 9e-172 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 139 / 8e-38 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 136 / 1e-37 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 136 / 8e-37 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 127 / 2e-34 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 128 / 1e-33 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 125 / 1e-32 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 114 / 7e-29 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 111 / 1e-27 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003194 [exp] 308 / 1e-103 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10017029 [exp] 119 / 4e-30 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021353 [exp] 117 / 1e-29 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10013597 [exp] 111 / 5e-29 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10017547 [exp] 113 / 1e-28 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10021255 [exp] 110 / 2e-28 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10028742 [exp] 112 / 5e-28 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10033238 [exp] 108 / 7e-27 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10008270 [exp] 107 / 2e-26 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10024164 [exp] 98 / 3e-23 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G088900.2 pacid=42793229 polypeptide=Potri.001G088900.2.p locus=Potri.001G088900 ID=Potri.001G088900.2.v4.1 annot-version=v4.1 ATGGGGTGCAATTCTTCAAAAGGAATTGAAGCAAGTGAAGATGTCTATCTTCCACCACCTTCCAGCTTCGCAGTATTCGACATCAACTCAATTCAAGAAC CATGGCTTGTAGTGGGCAATTCTGTTCAAGAAAATCAAGAAATGCCATCAAATGTGCAAGCTCCAATACTAGAGAAGCTCAACCAGTTTGAAACGGATGC TCCTCATTCTTGGGATGAGGTTAGTAAGGCACTTAAAGACCTTAAGCCTACCCTCAGTAAAAAAACGCCTTTTGCCACACCACCACCACCATCACAAAAG GCGCCTTATACTACACCAACTCAAGTTGCTAAAACCAACCAAGAAAAGAAGCAAGAACCGAGAAAGAGTGTTTCTATTCATACCCTTGAAGAGCTGGAAG CAAAACTAGCTCCAAAACCTGAAAAGGAGTTGAAAAAAACAGACAAGCCCGAGTCACGAGTTGGGACTGAGCCAGTGATCGAGTCAGGTGCTGGTGGTGC TGTCAGGTCGGTGAAGGAGAATATCTTCATAGTAAGGGATAAGTTAGAGAGGGAAAAGGGAGGGAAGCCTGTGAAGAAGTTGGACCCACTGAGTGGATTC GAAGAGAAGAGTCCACCAAGTGGAGCTAACTCAGTTGTGCTTTACACGACGTCGTTACGAGGGGTACGTAAGACATTTGAAGATTGTACTCGTGTGAAGA CCATATTTGAGCTGCACCATGTAATTTTTTATGAGAGGGACGTCTCGTTGCATGGGGAGTTTTTGAACGAGGTTTTTATCAAGGGAAGGTACATAGGAGG AGTTGATGAGGTTGTTGAGTTGAATGAGTCAGCTCGACTCGGGAGGATACTAGTTTGGGCACGCGTGGAGCGAGTTGAAGGAAGACAAGCGTGTGAAGGA TGTGGGGATGCTAGGTTTGTTTTGGTTGATGGGGTCAAGGAGAGGTGTGGGAAGTGCAATGAGAATGGGTTGGTTCGTTGCCCAACTTGTCATTAA
AA sequence Show only first row Show all	>Potri.001G088900.2 pacid=42793229 polypeptide=Potri.001G088900.2.p locus=Potri.001G088900 ID=Potri.001G088900.2.v4.1 annot-version=v4.1 MGCNSSKGIEASEDVYLPPPSSFAVFDINSIQEPWLVVGNSVQENQEMPSNVQAPILEKLNQFETDAPHSWDEVSKALKDLKPTLSKKTPFATPPPPSQK APYTTPTQVAKTNQEKKQEPRKSVSIHTLEELEAKLAPKPEKELKKTDKPESRVGTEPVIESGAGGAVRSVKENIFIVRDKLEREKGGKPVKKLDPLSGF EEKSPPSGANSVVLYTTSLRGVRKTFEDCTRVKTIFELHHVIFYERDVSLHGEFLNEVFIKGRYIGGVDEVVELNESARLGRILVWARVERVEGRQACEG CGDARFVLVDGVKERCGKCNENGLVRCPTCH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64500			Glutaredoxin family protein (....		Potri.001G088900 [exp]	0	1
AT2G15020			unknown protein		Potri.009G094100 [exp]	1.41	0.9897
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	2.82	0.9583
AT5G16340			AMP-dependent synthetase and l...		Potri.013G096200 [exp]	3.46	0.9803
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.018G131500 [exp]	5.00	0.9368
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	5.00	0.9765
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.016G038000 [exp]	7.41	0.9061
AT2G27180			unknown protein		Potri.009G151600 [exp]	9.79	0.9484
AT3G52740			unknown protein		Potri.004G203000 [exp]	11.22	0.9605
AT4G16490			ARM repeat superfamily protein...		Potri.006G015100 [exp]	12.32	0.9427
AT3G56290			unknown protein		Potri.019G056400 [exp]	12.40	0.9605

Compare expression of checked genes

Potri.001G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.