Plant FIBer expression Database

Potri.001G089400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10920 152 / 5e-48 KELP transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2)
AT4G00980 78 / 2e-17 zinc knuckle (CCHC-type) family protein (.1)
AT5G09250 68 / 2e-15 KIWI ssDNA-binding transcriptional regulator (.1.2)
AT5G09240 49 / 6e-08 ssDNA-binding transcriptional regulator (.1.2.3)
AT5G42060 47 / 9e-08 DEK, chromatin associated protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G171900
[exp]
120 / 2e-32 AT4G00980 373 / 7e-125 zinc knuckle (CCHC-type) family protein (.1)
Potri.007G101100
[exp]
59 / 1e-11 AT5G09250 115 / 7e-35 ssDNA-binding transcriptional regulator (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032410
[exp]
166 / 5e-53 AT4G10920 169 / 2e-54 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2)
Lus10023061
[exp]
133 / 4e-40 AT4G10920 132 / 7e-40 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2)
Lus10030245
[exp]
120 / 3e-35 AT4G10920 136 / 3e-41 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2)
Lus10003998
[exp]
107 / 1e-27 AT4G00980 226 / 9e-68 zinc knuckle (CCHC-type) family protein (.1)
Lus10013733
[exp]
65 / 3e-14 AT5G09250 139 / 2e-44 ssDNA-binding transcriptional regulator (.1.2)
Lus10039207
[exp]
54 / 3e-10 AT5G09250 125 / 1e-38 ssDNA-binding transcriptional regulator (.1.2)
Lus10032409
[exp]
43 / 5e-06 AT5G42060 58 / 2e-12 DEK, chromatin associated protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0609 sPC4_like PF02229 PC4 Transcriptional Coactivator p15 (PC4)
CL0609 PF08766 DEK_C DEK C terminal domain
Representative CDS sequence
>Potri.001G089400.1 pacid=42790830 polypeptide=Potri.001G089400.1.p locus=Potri.001G089400 ID=Potri.001G089400.1.v4.1 annot-version=v4.1
ATGGAACCCAAACTCAGAATGCAAATCAAAGAAACAGTACGAGAAATCTTGGAAGAATCTGACATGGAAACTACAACTGAACATCAGATTCGTAGGTTAG
CATCCAACAAGCTTGACCTTGACCTTGATAAATCTGAGTACAAGACTTATGTTAGACACGTCGTTAATTCTTTCCTCGAAGAACAAAAGGCCAAACAAGA
AGACGATGAAGAAGAAACAGGCAAGCAGGAGCAAGAGTATGATGATGAGGGCAATCTTGTCATTTGCAGGTTGTCAGCTAAGAGAAAAGTGACAATACAG
AATTTCAGAGGAGCAAATTTGGTGTCAATAAGGGAGTATTACTATGACGGTGGAGCAGAAAGACCTACTACTAAAGGAATAAGCTTAAACGAGGAACAAT
GGTCGACCTTGAGGAAGAATATACCAGCAATTGAGAAAGCCGTGAAGGACATGCAGGATCGGGATATGTGA
AA sequence
>Potri.001G089400.1 pacid=42790830 polypeptide=Potri.001G089400.1.p locus=Potri.001G089400 ID=Potri.001G089400.1.v4.1 annot-version=v4.1
MEPKLRMQIKETVREILEESDMETTTEHQIRRLASNKLDLDLDKSEYKTYVRHVVNSFLEEQKAKQEDDEEETGKQEQEYDDEGNLVICRLSAKRKVTIQ
NFRGANLVSIREYYYDGGAERPTTKGISLNEEQWSTLRKNIPAIEKAVKDMQDRDM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10920 KELP transcriptional coactivator p1... Potri.001G089400
[exp]
0 1
Potri.013G057832
[exp]
7.21 0.7901
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Potri.006G033201
[exp]
8.30 0.8088
AT4G25200 ATHSP23.6-MITO mitochondrion-localized small ... Potri.003G075900
[exp]
8.83 0.7939
AT5G49400 zinc knuckle (CCHC-type) famil... Potri.008G107100
[exp]
18.38 0.7703
AT1G70180 Sterile alpha motif (SAM) doma... Potri.010G036500
[exp]
20.78 0.7662
AT1G22920 CSN5A, JAB1, AJ... ARABIDOPSIS JAB1 HOMOLOG 1, CO... Potri.018G006100
[exp]
24.10 0.7210 AJH1.3
AT1G07030 Mitochondrial substrate carrie... Potri.001G282400
[exp]
26.32 0.7777
AT5G59910 HTB4 Histone superfamily protein (.... Potri.010G230701
[exp]
31.52 0.7038
AT5G61210 SNP33, ATSNAP33... soluble N-ethylmaleimide-sensi... Potri.012G066700
[exp]
35.24 0.7862
AT4G35910 Adenine nucleotide alpha hydro... Potri.006G051300
[exp]
56.56 0.7573

Potri.001G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.