Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10925 348 / 1e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) AT4G23960 150 / 1e-45 F-box family protein (.1) AT4G23970 73 / 2e-16 unknown protein AT3G09250 66 / 3e-12 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141600 [exp] 471 / 2e-169 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.016G105600 [exp] 73 / 8e-15 AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.006G093700 [exp] 72 / 3e-14 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023064 [exp] 365 / 2e-127 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10032407 [exp] 361 / 4e-126 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10001815 [exp] 324 / 2e-112 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10003192 [exp] 188 / 8e-60 AT4G10925 187 / 2e-60 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10021504 [exp] 66 / 2e-12 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10022605 [exp] 65 / 2e-12 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF13474 [poplar] [flax] SnoaL_3 SnoaL-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G089600.1 pacid=42792817 polypeptide=Potri.001G089600.1.p locus=Potri.001G089600 ID=Potri.001G089600.1.v4.1 annot-version=v4.1 ATGGAGATTACTGCCTTCGATTTCACTCTCTCTCAATCTTTCCTCATAGCCTCATCTGTTACTCTCCTCTCTCTCTTACTCGCTTTCCTCACTCTCCGAT CAAAATCACCCAAACCGGATCTCACCGTCCATTCCTCCACGTCAGCAGCATCAACAACCAAAACGATAACCTGCAGGTGTTGCTGCTCCTGTAACGGTGA AATTGGAAGTGTTAATAGTGCGGATTCTTTTACGGCGGAGGAGAAGTACTTGAACGGTGGCGGTGCGGCGGAGGAGATGGTGGTGGAAAAGCAGACCGGA GCGTCGATGATGGAGCAGCTAGTGCCGGAGATTACGACACACGCGCTTAGTTATTTGGACTATCCGAGTTTGTGTAGGTTGTCGATGACTAATTCGCTAA TGCGGAAAGCTGCTAATGATGATAACGCGTGGAAGGCGCTTTATCATAAGGATTTTACACTGGAACAAGATAGTGTGACACCTGTTAATGGGTGGAAGGC GTACTATGCGGCTACAAGAGCCATTGTGAATGTCAATACAGAATTCTTTAACATCATTAGAGAAAGATCTCTTCAAGCAATGAGTCAATTATGGCTTCAT GCAGATTATGTGAAGTGCACCCATGCATCTGGGGAAAATTTGTCAGGGTATAACGCTGTAATACAGAGTTGGCAGTTTGCATTTAATTGGGAGCAAGGAT TGGACTTCCAGGTTCGTGATGTAAGGGCTCGTGTGCTGACTGACATGGCTTGGGTTACCATGAAAATGTATGTTGTTGAGATGGACAATGGGCCATTCAA CGTAACTAATGTCTTTGAGTTCCACAATGGACGGTGGCACCTGGTGCATCACCACTGTTCGGTGATGGTCCTCGACGGGGAGGTGGACCAGCAGATTATG CATGCATAA
AA sequence Show only first row Show all	>Potri.001G089600.1 pacid=42792817 polypeptide=Potri.001G089600.1.p locus=Potri.001G089600 ID=Potri.001G089600.1.v4.1 annot-version=v4.1 MEITAFDFTLSQSFLIASSVTLLSLLLAFLTLRSKSPKPDLTVHSSTSAASTTKTITCRCCCSCNGEIGSVNSADSFTAEEKYLNGGGAAEEMVVEKQTG ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPVNGWKAYYAATRAIVNVNTEFFNIIRERSLQAMSQLWLH ADYVKCTHASGENLSGYNAVIQSWQFAFNWEQGLDFQVRDVRARVLTDMAWVTMKMYVVEMDNGPFNVTNVFEFHNGRWHLVHHHCSVMVLDGEVDQQIM HA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10925			Nuclear transport factor 2 (NT...		Potri.001G089600 [exp]	0	1
AT4G32750			unknown protein		Potri.006G241200 [exp]	2.82	0.8332
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Potri.002G243300 [exp]	4.24	0.7442
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	4.89	0.7721
AT4G33690			unknown protein		Potri.001G287900 [exp]	6.92	0.7402
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G221301 [exp]	10.19	0.6875
					Potri.010G139550 [exp]	10.24	0.8024
AT4G02210			unknown protein		Potri.002G200600 [exp]	11.83	0.7527
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	17.32	0.6887
AT4G20400		PKDM7B, JMJ14	JUMONJI 14 (.1.2)		Potri.001G440900 [exp]	18.46	0.6844
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	21.54	0.6858

Compare expression of checked genes

Potri.001G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.