Plant FIBer expression Database

Potri.001G089700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23950 399 / 2e-132 Galactose-binding protein (.1.2)
AT1G71360 340 / 3e-109 Galactose-binding protein (.1)
AT1G22882 332 / 2e-105 Galactose-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G141500
[exp]
902 / 0 AT4G23950 411 / 4e-137 Galactose-binding protein (.1.2)
Potri.019G068900
[exp]
360 / 4e-117 AT1G71360 484 / 3e-165 Galactose-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032405
[exp]
576 / 0 AT4G23950 446 / 5e-150 Galactose-binding protein (.1.2)
Lus10023065
[exp]
556 / 0 AT4G23950 427 / 9e-143 Galactose-binding protein (.1.2)
Lus10003532
[exp]
321 / 1e-102 AT1G71360 432 / 3e-146 Galactose-binding protein (.1)
Lus10002929
[exp]
323 / 7e-101 AT1G71360 476 / 1e-159 Galactose-binding protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0202 GBD PF07738 Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence
>Potri.001G089700.1 pacid=42791554 polypeptide=Potri.001G089700.1.p locus=Potri.001G089700 ID=Potri.001G089700.1.v4.1 annot-version=v4.1
ATGAAAAAACCTTTCTCATTCTTAAACAACAAAAACAGAAGCAGCAATTCAAGGAGGAGAAGTTTGTATGAGCTACACTTGTCTTTGATTCTCTTACTTT
GGGGTCTTCTCTTCTCTTTCTGTGCTGGTCATGAAAATCAAGGGAATTTGACTCCTGACAACAGTAGCATACCTTTTTCTAGTGATCTTAAAGATACTAC
TCTTCGTGGTGATACACCTTCACATGATGCAATTACAAGCAATAATGATACAAATGGAATTCTGCTAGAGGTCAATCCGTCTACCAGCAGTAAGAATGCT
ACAGTTCATACTGACTTAGGAAATAAGAAGTGCCCACTTCCAGAGACAAATAGATTACAAGAAATAATTTTGAGTGCTTTAGGTTATGGATCTTCAGTGT
ATAAAATGCGGAATCCTGAAGAACTGACGACAGGTAAACTGAAAGAACTACCGAGTGGGAGACCTCAGCATCTGACTTATCTCAACTTTGACGAGTTCTG
GAACATAATAAGACAAGAAAAAGGCAAAGTTATCCCCAAGCAGCTTGCTAACATCACCCATCGGCTTGAACCTGATGGAAGAGAGTATAACTATGCCTCT
TTGACAAAGGGCGCAAAGGTGCTTGCGTATAATAAGGAGGCTAAAGGAGCATGTAACATACTGGGGAAGGATCATGATAAGTACCTGAGAAACCCTTGTT
CTGTGGTAGAGAAGTTTGTTGTTATCGAGCTTTCGGAGGAGACGCTGGTTGATGTTGTTAAAATTGCGAATTTTGAACATTATTCCTCCAATTTCAAGGA
TTTTGAACTGTCCGGAAGTTTAAACTATACAACCAAAAGTTGGATTCCTTTGGGAAATTTTGTGGCTGCAAATGTCAAGCACATTCAAGATTTCAAACTG
CCAGAACCCAAATGGGTGAGGTATTTGAAGTTGAATTTACGTAGTCATTATGGGTCAGGATTTTACTGCACATTGAGTGTTGTCGAGGTATATGGAGTAG
ATGCCATTGAGCGTATGCTTGAAGATTTCTTTGTGCCATCCGAAGAACCTCTTCCCATTGAATTGCCAAAGCCTAGTTTAACTGCAGCACCACATTTAAA
GCCAGAATTAAATCTAACTGACAAGGAAAGTAGTGGAAAAGTTCGCAATGGGGTCGATAATGCTGGTATGGGGGCCGAGAACCTATCTGATATTCAACAA
TCCCATGCCGATGGGAAGAAAAGTCCTGAGAGTATAAACATAATGGCTGAACCAGTAACTGAAGTTAGACAGCTACCAATTAGCAGGAAACCAGGCGACA
CTCTTCTAAAGATCTTGATGCAGAAGGCGAAGTCACTTGAACTAAGTTTAACTATGCTTGAGGGGTATATTAAAGAAACGAATCAGAGAAAAGGAGATAT
TATGCCAAAGCTTGAAGAAGAGCTATCCGGAATTTCATTGCTTGTGGAGACGACCAGAACAGAAATTAGAGATCTCATGGAATGGAAGGAGAACACGGAT
AAAGTGCTCATGGAGTACCAGTCATGGAAAGCCGGTGTCTCATCTAGTATGGATACGTTGGTCAGAGAAAATACAAGGCTAAGCAGATTGGACATCGAAA
AGGTTGCAAATGATCAGGCAAATCTGGAAAGTAAAGAACTCGCTGTGCTAGCCATGAGTCTTTTCTTCATGTGCTTTTCAACTGTCATGCTAATCTCTGC
AAAAGTTTCAAAATATTTAGGAGCAGCTTCAAATTCGGACAAGGCATGCCGAACCAGCAGAGGTTGGATGATGATACTAGTTAGCAGCACCATGATAGTA
TTCATTACAATACTCTCCAGCTAG
AA sequence
>Potri.001G089700.1 pacid=42791554 polypeptide=Potri.001G089700.1.p locus=Potri.001G089700 ID=Potri.001G089700.1.v4.1 annot-version=v4.1
MKKPFSFLNNKNRSSNSRRRSLYELHLSLILLLWGLLFSFCAGHENQGNLTPDNSSIPFSSDLKDTTLRGDTPSHDAITSNNDTNGILLEVNPSTSSKNA
TVHTDLGNKKCPLPETNRLQEIILSALGYGSSVYKMRNPEELTTGKLKELPSGRPQHLTYLNFDEFWNIIRQEKGKVIPKQLANITHRLEPDGREYNYAS
LTKGAKVLAYNKEAKGACNILGKDHDKYLRNPCSVVEKFVVIELSEETLVDVVKIANFEHYSSNFKDFELSGSLNYTTKSWIPLGNFVAANVKHIQDFKL
PEPKWVRYLKLNLRSHYGSGFYCTLSVVEVYGVDAIERMLEDFFVPSEEPLPIELPKPSLTAAPHLKPELNLTDKESSGKVRNGVDNAGMGAENLSDIQQ
SHADGKKSPESINIMAEPVTEVRQLPISRKPGDTLLKILMQKAKSLELSLTMLEGYIKETNQRKGDIMPKLEEELSGISLLVETTRTEIRDLMEWKENTD
KVLMEYQSWKAGVSSSMDTLVRENTRLSRLDIEKVANDQANLESKELAVLAMSLFFMCFSTVMLISAKVSKYLGAASNSDKACRTSRGWMMILVSSTMIV
FITILSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23950 Galactose-binding protein (.1.... Potri.001G089700
[exp]
0 1
AT2G43180 Phosphoenolpyruvate carboxylas... Potri.002G231000
[exp]
1.00 0.9283
AT5G03650 SBE2.2 starch branching enzyme 2.2 (.... Potri.006G115100
[exp]
1.73 0.9207
AT1G80770 PDE318 pigment defective 318, P-loop ... Potri.002G134900
[exp]
6.48 0.9091
AT1G15490 alpha/beta-Hydrolases superfam... Potri.003G059400
[exp]
9.27 0.8827
AT3G54000 unknown protein Potri.006G093000
[exp]
12.64 0.8898
AT3G06980 DEA(D/H)-box RNA helicase fami... Potri.010G004700
[exp]
16.49 0.9264
AT5G53500 Transducin/WD40 repeat-like su... Potri.002G174100
[exp]
19.05 0.8894
AT5G51020 CAA33, CRL constitutive activator of AAA-... Potri.012G109800
[exp]
21.26 0.9117
AT5G58870 FTSH9 FTSH protease 9 (.1) Potri.001G249100
[exp]
21.35 0.9088
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.005G040600
[exp]
23.91 0.8809

Potri.001G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.