Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23940 1240 / 0 FtsH extracellular protease family (.1) AT1G06430 267 / 2e-77 FTSH8 FTSH protease 8 (.1) AT2G30950 266 / 2e-77 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G15250 260 / 3e-75 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT5G42270 253 / 2e-72 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 253 / 4e-72 FTSH1 FTSH protease 1 (.1) AT2G26140 242 / 3e-68 FTSH4 FTSH protease 4 (.1) AT3G47060 236 / 1e-65 FTSH7 FTSH protease 7 (.1) AT5G58870 235 / 2e-65 FTSH9 FTSH protease 9 (.1) AT5G53170 233 / 1e-64 FTSH11 FTSH protease 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215100 [exp] 269 / 3e-78 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 267 / 3e-77 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 264 / 2e-76 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.005G249200 [exp] 256 / 1e-73 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 254 / 9e-73 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.006G227700 [exp] 242 / 2e-68 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 239 / 8e-67 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 238 / 3e-66 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.002G220366 [exp] 221 / 9e-66 AT1G06430 405 / 1e-138 FTSH protease 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032404 [exp] 1136 / 0 AT4G23940 1267 / 0.0 FtsH extracellular protease family (.1) Lus10023066 [exp] 1123 / 0 AT4G23940 1246 / 0.0 FtsH extracellular protease family (.1) Lus10001054 [exp] 265 / 1e-76 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 265 / 1e-75 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 248 / 6e-73 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 253 / 4e-72 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 252 / 7e-72 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 238 / 2e-66 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 236 / 1e-65 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 236 / 1e-65 AT5G53170 1087 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.001G089800.2 pacid=42793430 polypeptide=Potri.001G089800.2.p locus=Potri.001G089800 ID=Potri.001G089800.2.v4.1 annot-version=v4.1 ATGACTAGCATTGACACTCTATTCTCTCTCAGGGTTTGTCTTCCCAAACCCTATAAAAAACCCTTAAAATCCCCTCCAAAATTTAGATCGAAAACCCTAT TTCTTAACCGATCACTCACAGTCTTATGCGAGGTGAATTCAGCCTCCACGGCACAGTCAGGTGACACTAACAAAGAAGATTTTGTCACTAGAGTTTTGAA GCAAAACCCTAGCCAAATTGAACCCAGATACTTAATCGGTGACAAGTTTTATACTTCGAAGGAAAAACAGGATTTGAGCAAGAAAAAAAATGTGGGGTTT ATTGAAATTGTGGACAGGTTTTTGAATTTGAAAGGCAAAGTGAAAAAAGAGGGAAATGAGAGTGAAAATGAGGAAAAGGCTGTGTACTTGAAGGATATTT TGAGGGAGTACAAGGGAAAGCTTTATGTACCTGAGCAGGTTTTCAGTGTAAAGTTATCTGAAGAAGAGGAGTTTGATAGGAATTTGGAAGAATTGCCAAA AATGGGATTTGAAGATTTTAAGAAAGCAATGGAGAGTGAAAAGGTCAAGTTATTGACTTCAAAGGAAGCTGCAATGGGTACTTATGCAAATGATTATAGG GGTTTTATTGTTGATTTGAAGGAAATTCCTGGCGAGAAGAGTTTGCATAGAACAAAATGGACAATGAGATTAAATGAGAATGAAGCTCAAACACTTTTGG AGGAGTATACGGGTCCATTCTATGAAATAGAGAGGCATATGGCGTCTTCAGTAGGAAAGTTGCCAGAGTACCCTCATCCAGTGGCATCTTCCATATCTAG CAGAATGATGGTAGAGCTTGGAATGGTGACTGCTGTGATGGCTGCTGCAGCAGTTGTTGTTGGAGGGTTCCTAGCTTCTGCAGTATTTGCTGTTACCAGT TTTATTTTTGTGGCAACTGTATATGTTGCATGGCCTATAGCCAAGCCATTTGTTAAACTGTTTCTTGGTCTAACCTTTAGTATTTTAGAGGGAGTTTGGG ATTATGTGGTTGATATTTTCAGTGATGGAGGGCTCTTCTCTAAGTTTTATGAATTCTACACTTTTGGTGGTGTCTCTGCCAGCATCGAAATGCTAAAACC AATAATGCTCGTGCTTTTAACCATGGTCCTTCTAGTCCGTTTCACTCTTTCGAGAAGACCTAAGAACTTCAGGAAGTGGGATTTATGGCAAGGAATTGAT TTTTCACGTTCTAAAGCAGAAGCTCGTGTTGATGGTTCAACTGGAGTTAAATTTAGTGACGTGGCTGGGATTGATGAAGCAGTAGAGGAACTTCAAGAGT TGGTGAGATACTTGAAGAATCCAGAACTGTTTGATAAAATGGGAATAAAGCCTCCACATGGAGTACTTTTGGAAGGTGCTCCTGGATGCGGCAAGACCCT GGTTGCAAAGGCTATAGCAGGTGAAGCTGGAGTTCCATTTTACCAAATGGCTGGATCTGAATTTGTTGAAGTTTTAGTTGGTGTTGGTTCTGCTCGTATC AGAGATCTTTTCAAGAGAGCCAAGGTAAATAAACCATCAGTTATATTCATTGATGAAATTGATGCATTGGCAACTAGGCGTCAAGGGATTTTCAAGGAAT CTACTGACCACCTGTATAATGCTGCCACTCAAGAGAGGGAAACTACATTGAATCAGCTTTTGATAGAGCTTGATGGGTTTGACACTGGAAAAGGTGTTAT ATTTCTAGCTGCAACAAATCGTAGGGACTTGTTAGATCCAGCACTTCTTCGGCCAGGTCGTTTTGATCGCAAGATAAGAATTCGACCTCCTAATGCTAAA GGGAGATTGGAAATTTTGAAAATCCATGCAAGCAAAGTGAAAATGTCAGATTCTGTTGATTTGTCTACTTATGGAAAAAATTTACCGGGATGGACTGGAG CAAAATTAGCTCAGCTGGTCCAAGAGGCTGCTCTTGTGGCGGTCAGGCAAGGGCATGCGGCAATTCTTCAGTCAGACATGGATGATGCAGTAGACCGACT TACTGTTGGACCAAAGCGTGTAGGAATAGAGTTGGGTCATCAGGGGCAGTGCCGTAGAGCCACTACTGAACTGGGAGTTGTAATGACATCTCATTTGCTT AGGCGATATGAAAATGCAAAGGTTGAATGTTGTGATCGGATTTCAATTGTCCCTCGCGGTCAGACATTATCACAACTTGTGTTTCATCGACTTGATGACG AATCATACATGTTTGAGCGTTTACCTCAGCTGCTGCATCGTCTTCAGGTTTTTCTTGGAGGGAGGGCAGCTGAAGAGGTCATTTATGGACGGGATACATC AAGGGCATCAGTTTCCTACCTTGCAGATGCATCTTGGCTTGCTCGTAAAATTATAACTATATGGAACTTGGAGAATCCAATGGTAATACATGGAGAACCG CCTCCTTGGAGAAAGAAAGTTAGATTCATGGGCCCACGGCTGGATTTTGAAGGATCACTTTATGATGACTATGACCTAATTGAACCCCCTATCAACTTCA ATTTGGATGATCAAGTTGCCCAAAGGACTGAGAAGCTGATATGTGATATGTATGGAAGGACAGTTTCTCTGCTAAAACGGCACCATGCAGCTTTGCTCAA AGCTGTGAAGGTTCTTCTTAATCAGAAGGAAATCAGTGGAGAAGAAATTGATTATATTTTGAACAATTACCCTCCGCAAACACGGTTAAGTCTTCTTCTG GAGGAGGAAAATCCAGGAATCCTTCCCTTCTTCAAACAAGAACTGGAGAATGAATTAGATTATGCGTTGCTAACAACATCAGAAGGAAAAACCCCATGA
AA sequence Show only first row Show all	>Potri.001G089800.2 pacid=42793430 polypeptide=Potri.001G089800.2.p locus=Potri.001G089800 ID=Potri.001G089800.2.v4.1 annot-version=v4.1 MTSIDTLFSLRVCLPKPYKKPLKSPPKFRSKTLFLNRSLTVLCEVNSASTAQSGDTNKEDFVTRVLKQNPSQIEPRYLIGDKFYTSKEKQDLSKKKNVGF IEIVDRFLNLKGKVKKEGNESENEEKAVYLKDILREYKGKLYVPEQVFSVKLSEEEEFDRNLEELPKMGFEDFKKAMESEKVKLLTSKEAAMGTYANDYR GFIVDLKEIPGEKSLHRTKWTMRLNENEAQTLLEEYTGPFYEIERHMASSVGKLPEYPHPVASSISSRMMVELGMVTAVMAAAAVVVGGFLASAVFAVTS FIFVATVYVAWPIAKPFVKLFLGLTFSILEGVWDYVVDIFSDGGLFSKFYEFYTFGGVSASIEMLKPIMLVLLTMVLLVRFTLSRRPKNFRKWDLWQGID FSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGAPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARI RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRPPNAK GRLEILKIHASKVKMSDSVDLSTYGKNLPGWTGAKLAQLVQEAALVAVRQGHAAILQSDMDDAVDRLTVGPKRVGIELGHQGQCRRATTELGVVMTSHLL RRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERLPQLLHRLQVFLGGRAAEEVIYGRDTSRASVSYLADASWLARKIITIWNLENPMVIHGEP PPWRKKVRFMGPRLDFEGSLYDDYDLIEPPINFNLDDQVAQRTEKLICDMYGRTVSLLKRHHAALLKAVKVLLNQKEISGEEIDYILNNYPPQTRLSLLL EEENPGILPFFKQELENELDYALLTTSEGKTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23940			FtsH extracellular protease fa...		Potri.001G089800 [exp]	0	1
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	4.24	0.9301
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	16.15	0.9175
AT4G33760			tRNA synthetase class II (D, K...		Potri.001G289001 [exp]	16.49	0.9056
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	16.88	0.9114
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	17.74	0.9273
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	23.87	0.9243
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	24.49	0.8964
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	26.49	0.9070
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	27.49	0.9104
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	28.70	0.9269

Compare expression of checked genes

Potri.001G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.