Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10930 506 / 4e-160 unknown protein AT4G10940 248 / 1e-75 RING/U-box protein (.1) AT3G05670 76 / 2e-13 RING/U-box protein (.1) AT3G58030 55 / 2e-07 RING/U-box superfamily protein (.1.2.3.4) AT2G39100 48 / 3e-05 RING/U-box superfamily protein (.1) AT2G42030 47 / 9e-05 RING/U-box superfamily protein (.1) AT5G67120 46 / 9e-05 RING/U-box superfamily protein (.1) AT1G13195 45 / 0.0002 RING/U-box superfamily protein (.1.2) AT4G03510 45 / 0.0002 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G44410 45 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021000 [exp] 70 / 9e-12 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 68 / 3e-11 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.006G193600 [exp] 50 / 9e-06 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 49 / 1e-05 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.009G023300 [exp] 49 / 3e-05 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.016G115300 [exp] 47 / 3e-05 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 45 / 0.0001 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.007G031600 [exp] 44 / 0.0002 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.008G215200 [exp] 45 / 0.0003 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023068 [exp] 1167 / 0 AT4G10930 586 / 0.0 unknown protein Lus10032402 [exp] 1123 / 0 AT4G10930 553 / 3e-179 unknown protein Lus10001535 [exp] 315 / 6e-97 AT4G10940 189 / 4e-59 RING/U-box protein (.1) Lus10015213 [exp] 67 / 8e-11 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 66 / 2e-10 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10004162 [exp] 54 / 7e-07 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 52 / 2e-06 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 50 / 7e-06 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 50 / 1e-05 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10006448 [exp] 47 / 5e-05 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15870 [poplar] [flax] EloA-BP1 ElonginA binding-protein 1
Representative CDS sequence Show only first row Show all	>Potri.001G089900.2 pacid=42788110 polypeptide=Potri.001G089900.2.p locus=Potri.001G089900 ID=Potri.001G089900.2.v4.1 annot-version=v4.1 ATGATAATGGAGGTGGATTTTGTTACAAGTGGAATATTAGAAGAAGAATTGCCTCTTGAAGTTGACGAGAATATTCATGATAATTATAATTTTGAGGGCG AAAGATGTGGGATATGCATGGATATTGTTATTGACCGGGGCGTTCTCGATTGTTGCCATCACTGGTTTTGTTTTGGTTGCATTGACAATTGGGCCACAAT CACGAACCTTTGTCCACTCTGTCAGAATGAATTTCAGTCTATTACATGTGTTCCGGTATATGATACCATTGGAAACAACAAAGTTGATGAGGACTCACTT TCCAGAGATGATGATTGGTCTATTGAAGGGAAGAACAACACTCTCTCCTTTCCATCATACTATATCGATGAAAATGCAGTTATCTGCTTGGATGGAGATG GCTGCAAGATTCGAAGTGGATCAGCAAATATTGAGGAAGAATCTAATCTCGATACCTCTATTGCTTGCGATTCTTGTGACATTTGGTATCATGCTTTTTG TGTGGGCTTTGATGCTGAAGGGACATCAGAGGATACATGGTTATGCCCGAGATGCACAGTTGGTGAAGTGCCACAGAAATCTGATGTTGCTTCGCTACAG AAGCCAAACAACCAGTGTTATTCAGAGAATTCTCACAGTAGTAGTTTTGCTGAGGCTGAGGCTGCTTTTTCTGGAAAGATGTCTGTATCTATCGCTGATG CTGGAGAAACAGCTGTTGTTGTCTCAATGGTTGGAGGCACTAAATGGACTGAAGAACCAAGTAAACCAACCCTTGAAGTTGATGAGGACCTGATGGATGA TGCAGTTAAACCTGATGGCAATAGCTACAAGGTAGAAAGACAATCTAGCAAAAAGACTGATGTACAACCAACCGTGGAGGCACCGGAACTTGAACTGTCC TTATCGTGTGATGCATCCTTCAGTCACCTATCTACTTCCTTGGTGCTTGCTGAGTTGAAGACCATTTGTGATGATGGAACAGTGAATGAACCAATTATTG GTGATGGTGTTAAAAATTCTTTGAGAAAGTTGTTTAATGATTCCCTTGCCAGAAACAAGCTGTCTGGAAAGGAATCTAGTGAAGGTCTTCATCTTGGTTT ATCTTTGGGCTGTTCTTCATCTGGTTACATTAAGACCAATGAAACTGAAGATCAAGGGACCATTGAAGTACAACAGCAAAGTCTTTCTGAAGAATCTTTG CTAAGAAGAGATGAGAAGATTCTACCAGTTGCTAATGAGGAGGCCATGAAAATTATTGGTGTGAAGAGAAAGCATGCCACTTGCAGTGATGATGCTGTTA AGACTGCTGATGATAACGAAGACAATGCTAAGAATGAAGCTGCCGTTCTTGCAAAGAAGACCAGAGTCAGCAGGAAGTTGCAAATAACTCCTAAGGGCCA GGACAGTGCATTTCTTCCAGAAGATTCCCAAAAGTGCCCCGCCAAAATAGCAGTTCTAAAAAATGTCAAATTAAAACGATCTCTTGAAAAGCAAGATGTC ACTTCTGATATAATGAGTGTGGTTAAAGGGACTGGTCGTAGGACTTTGAAGGGGCTTGCTCACCAGAGTCCTCCAGATAAATCATCAAAAGAAGGGGAAA ATGCAGCGGGCTTGAGAGTGAAAAAGATCATGAGGAGAGCTGTGGAGGACAAGGAATCATCTGTTGTAGTTCAAAACCTTAGAAAAGAAATAAGAGAAGC TGTGCGTAACCGATCTTCTGATGAAATTGGGGAAAACCTTTTTGACCCAAAGCTTCTTGCTGCCTTCCGAACTGCTGTAGCAGGATCCACAGCGGAACCA GTGAAGAAGTTGCCCCCTTCTTCTCTGAAGGCAAAGAAGTCCTTGCTGCAGAAGGGTAAAGTTCGTGAGAATCTGACAAAGAAAATATATGGAGATTCTA ATGGAAGAAGAAAACGTGCATGGGATCGAGACTGTGATGTTGAATTCTGGAAGTATCGCTGTATGAGGGTTACAAAGCCTGAAAAAATTGCAACTTTGAA GTCAGTTCTTACTCTCCTTAGAAAGAATCCAGAAGGCTCAGAGATGGATCAGGGATATGAATTCCAGGAGACCAATCCCATTCTTTCAAGATTATATTTA GCAGACACATCTGTTTTTCCAAGAAAGGATGATATCAAGCCTCTCTTAGCTTCTACAACTACAAGTAACACTGAACAGAATAAAGCTCAGGAAATTTCAA TGGATAAAGTTCGGAAGCTATCTCCTGATGATCATACTCTTAAATCTGCAGGAGCAAATAAAGTATCATCAAAGCTTGTTGTGCCTTCAATTCATGATAA AGGGCTTAAGGATAAAGTTCTCAGCACAAATTGTCAGCCTGCTTCTAGCAAAGCACAACCGGGTGGATTTTCCAAAGTCAATTCACAGAAGGAAAAAGGT GCTCAATCTGATGATAAAAGGATGGATAAAAGAAAATGGGCCTTGGAGGTGCTTGCAAGAAAAAAGGCAGTTTCAGGTAAAACTGCAGCAGATGAAAAAC AGGAAGACAATGCAGTGCTTAAAGGAAATTATCCTTTACTCGCTCAACTGCCAATTGACATGAGACCGGTGTTAGCATCCTGTCGCCACAATAAAATCCC CATATCGGTTAGACAGACACAACTTTACCGACTGACAGAGCACTTCTTGAGGAAAGTAAATCTGCCAGAGATTCGCAAAACTGCAGAAACAGAGTTGGCT GTTGCAGATGCAATTAATATTGAGAAGGAGGTTGCCGACAAGGCAAACAGCAAAATAGTATATTTGAATCTTTGTTCTCAGGAAATAATGCGTCACTCAG ATGACAGAAAGTCCAATAGAGCCACGGTATCAAATTCTTCACCATCTGCAGTCACTGTTGATAGATTAGAACAAGATATCGATGAACTTCCAACGGATCC TGCAGTTTTAGATGCATTGAGAAATGCAGGACTCTTATCTGATTCTCCTCCAAGTAGTCCCCATCATAAAATGGAGGTTTCCAATGAAGTAGATGATTCC TCAATGCAGATCAAAGAAGAAGGGCCTGATAATGTATTTGAAATGGATTCTCATCCAGATGTTGATATATATGGTGATTTTGAGTATGATTTAGAAGATG AAGACTACATTGGTGCTACTAATTTGACAGTCCCCAAGCTAATAGTGGAAGAAGGCGAGTCAAGGATGAAAGTAGTCTTCTCCACTCTTAAATCTGAAAT GCCGAACAATTTTCAGGATCTTGAAGGTTGTTTGACTTTGGGGAATAATGAAGAACTCAAGGACTCTGCCTCCTCGCCAAAGATTCATGTTGATGCAGGC ATCATCAGCACAACCATGGAGGGTGGAACTAATAGGTCTTGTGCTGATTCAGAACCTCTACCTGGCGAAGAAGGTGAAGAACCTTCTCTTGCAGAATGTG ATGAACTATATGGTCCAGACAAGGAGCCTCTGATCAACAAATTTCCAGAAGAAGCATCTAGAAATCTACATGAGCTGACTGACCCTGAGGCTTCAACTAA GCACAAAGGTTCGGGAGAAAATGAAAATAATTCATCAAGACAAGATGGGAATACCAATGCGACCTCTGCTGGTCACACTTGTGATGGAGAAACCACGTGT GACCATTCTCAAACAGCTGAAAGTGGCCGTAAAAAGGATAGTTCTAAGACTAACACTAACAAGCAGGGTGACATTATCAATTCTGTTTCTAAGAAGGTTG AAGCGTACATCAAAGAGCACGTCAGGCCACTGTGTAAGAGTGGCATAATCACTGCTGAACAGTATAGATGGGCTGTGGCAAAAACTACTGATAAGGTTAT GAAATACCACTTGAATGCGAAAAATGCAAATTTCCTAATCAAGGAAGGTGAGAAGGTGAAGAAACTTGCTGAGCAGTATGTTGAGGCAGCACAGCAAAAG GAAAGAAGTGATTCTGTATGA
AA sequence Show only first row Show all	>Potri.001G089900.2 pacid=42788110 polypeptide=Potri.001G089900.2.p locus=Potri.001G089900 ID=Potri.001G089900.2.v4.1 annot-version=v4.1 MIMEVDFVTSGILEEELPLEVDENIHDNYNFEGERCGICMDIVIDRGVLDCCHHWFCFGCIDNWATITNLCPLCQNEFQSITCVPVYDTIGNNKVDEDSL SRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSANIEEESNLDTSIACDSCDIWYHAFCVGFDAEGTSEDTWLCPRCTVGEVPQKSDVASLQ KPNNQCYSENSHSSSFAEAEAAFSGKMSVSIADAGETAVVVSMVGGTKWTEEPSKPTLEVDEDLMDDAVKPDGNSYKVERQSSKKTDVQPTVEAPELELS LSCDASFSHLSTSLVLAELKTICDDGTVNEPIIGDGVKNSLRKLFNDSLARNKLSGKESSEGLHLGLSLGCSSSGYIKTNETEDQGTIEVQQQSLSEESL LRRDEKILPVANEEAMKIIGVKRKHATCSDDAVKTADDNEDNAKNEAAVLAKKTRVSRKLQITPKGQDSAFLPEDSQKCPAKIAVLKNVKLKRSLEKQDV TSDIMSVVKGTGRRTLKGLAHQSPPDKSSKEGENAAGLRVKKIMRRAVEDKESSVVVQNLRKEIREAVRNRSSDEIGENLFDPKLLAAFRTAVAGSTAEP VKKLPPSSLKAKKSLLQKGKVRENLTKKIYGDSNGRRKRAWDRDCDVEFWKYRCMRVTKPEKIATLKSVLTLLRKNPEGSEMDQGYEFQETNPILSRLYL ADTSVFPRKDDIKPLLASTTTSNTEQNKAQEISMDKVRKLSPDDHTLKSAGANKVSSKLVVPSIHDKGLKDKVLSTNCQPASSKAQPGGFSKVNSQKEKG AQSDDKRMDKRKWALEVLARKKAVSGKTAADEKQEDNAVLKGNYPLLAQLPIDMRPVLASCRHNKIPISVRQTQLYRLTEHFLRKVNLPEIRKTAETELA VADAINIEKEVADKANSKIVYLNLCSQEIMRHSDDRKSNRATVSNSSPSAVTVDRLEQDIDELPTDPAVLDALRNAGLLSDSPPSSPHHKMEVSNEVDDS SMQIKEEGPDNVFEMDSHPDVDIYGDFEYDLEDEDYIGATNLTVPKLIVEEGESRMKVVFSTLKSEMPNNFQDLEGCLTLGNNEELKDSASSPKIHVDAG IISTTMEGGTNRSCADSEPLPGEEGEEPSLAECDELYGPDKEPLINKFPEEASRNLHELTDPEASTKHKGSGENENNSSRQDGNTNATSAGHTCDGETTC DHSQTAESGRKKDSSKTNTNKQGDIINSVSKKVEAYIKEHVRPLCKSGIITAEQYRWAVAKTTDKVMKYHLNAKNANFLIKEGEKVKKLAEQYVEAAQQK ERSDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10930			unknown protein		Potri.001G089900 [exp]	0	1
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	3.46	0.8181
AT1G58250		SAB	SABRE, Golgi-body localisation...		Potri.002G110700 [exp]	3.87	0.8118	SAB.2
AT4G32160			Phox (PX) domain-containing pr...		Potri.006G256000 [exp]	8.24	0.7613
AT5G24350			unknown protein		Potri.012G020000 [exp]	10.77	0.8024
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	12.44	0.7334
AT2G48060			unknown protein		Potri.014G137200 [exp]	14.00	0.7686
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	15.36	0.8179
AT1G58230			binding (.1)		Potri.002G111000 [exp]	16.00	0.7956
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	19.28	0.7975
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	21.90	0.7996

Compare expression of checked genes

Potri.001G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.