Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64480 280 / 2e-96 CBL8 calcineurin B-like protein 8 (.1) AT5G24270 266 / 4e-91 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT5G47100 260 / 9e-89 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G17615 258 / 4e-88 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT4G26570 249 / 4e-84 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 241 / 3e-81 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G33000 242 / 5e-81 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G16350 209 / 3e-68 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 199 / 5e-65 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 176 / 9e-56 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015100 [exp] 312 / 3e-109 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 311 / 1e-108 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 271 / 3e-93 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.003G084200 [exp] 266 / 3e-91 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 260 / 8e-89 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.016G003500 [exp] 254 / 3e-86 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 250 / 1e-84 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.001G371700 [exp] 250 / 1e-84 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 248 / 1e-83 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022407 [exp] 306 / 1e-106 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 301 / 1e-104 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10001816 [exp] 288 / 1e-99 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10023069 [exp] 288 / 1e-99 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 283 / 2e-97 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 283 / 6e-95 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10011028 [exp] 275 / 3e-94 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10030252 [exp] 242 / 2e-81 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10015630 [exp] 241 / 2e-80 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 234 / 8e-78 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.001G090200.5 pacid=42791647 polypeptide=Potri.001G090200.5.p locus=Potri.001G090200 ID=Potri.001G090200.5.v4.1 annot-version=v4.1 ATGGATGCTTTCAAAGGCTGTTTTTGCTCGACAAAAACCAGTAAACTACCGAGGGATGAGGATCCTATCATACTTGCTTCTGAAACACCATTTACTGTCA ACGAAATAGAAGCTTTGCATGATCTATTCAAGAAGCTAAGCAGTACCATAGTTGATGATGATCTTATTCACAAGGAAGAATTTCAACTAGCGCTTTTCAG TAATAGCAGTAAGCAGAATATTTTCTCTGACAGGGTATTTGATCTTTTTGATGCCAAGCATAACGGGGTAATCAAATTTGGAGGGTTTGTTAGGTCATTA AGTGTGTTCCATCCAAATGCTTCTGAAGAGGATAAAATTACATTTGCATTCAGACTGTATGATCTACGACAAACTGGCTATATTGAGCGTGTTGAATTGA AGGAGATGGTACTGGCTATTCTGAGTGAATTGGATTCTACACTTACCGATGACGCTGTTGATTCTATTGTGGACAAGACAATGATTGAAGCAGATTTAAA TGGAGATGGCAGAATTGATCCAGAAGAGTGGAAGGACTTTGTAACTAAGAACCCATCTCTCCTGAAGAACATGACTCTTCCATATCTAAAGGAATTAACA CTAGCATTTCCCAGCTTTGTGCTCAATACCGAAGTGCCAGACTACAAATAA
AA sequence Show only first row Show all	>Potri.001G090200.5 pacid=42791647 polypeptide=Potri.001G090200.5.p locus=Potri.001G090200 ID=Potri.001G090200.5.v4.1 annot-version=v4.1 MDAFKGCFCSTKTSKLPRDEDPIILASETPFTVNEIEALHDLFKKLSSTIVDDDLIHKEEFQLALFSNSSKQNIFSDRVFDLFDAKHNGVIKFGGFVRSL SVFHPNASEEDKITFAFRLYDLRQTGYIERVELKEMVLAILSELDSTLTDDAVDSIVDKTMIEADLNGDGRIDPEEWKDFVTKNPSLLKNMTLPYLKELT LAFPSFVLNTEVPDYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Potri.001G090200 [exp]	0	1
AT5G10190			Major facilitator superfamily ...		Potri.007G091700 [exp]	4.47	0.9318
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	8.66	0.8780	KO,GA3.1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Potri.006G121000 [exp]	8.71	0.8913
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	10.77	0.9285
AT1G33170			S-adenosyl-L-methionine-depend...		Potri.011G147600 [exp]	11.57	0.8587
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.015G021900 [exp]	16.73	0.9219
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	16.97	0.9256
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	25.29	0.9142
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	27.74	0.9210
					Potri.001G405600 [exp]	35.62	0.9136

Compare expression of checked genes

Potri.001G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.