Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46500 698 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 669 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 469 / 5e-164 Protein kinase superfamily protein (.1) AT2G03890 217 / 2e-62 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G13640 215 / 9e-62 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G64470 196 / 6e-59 Ubiquitin-like superfamily protein (.1) AT1G26270 206 / 2e-58 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 197 / 7e-56 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 196 / 2e-55 Protein kinase superfamily protein (.1.2) AT1G27570 101 / 2e-22 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014600 [exp] 739 / 0 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 736 / 0 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.015G013600 [exp] 688 / 0 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.010G137400 [exp] 215 / 9e-62 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 212 / 1e-60 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 208 / 1e-59 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.017G101500 [exp] 201 / 8e-57 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 97 / 2e-24 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001817 [exp] 811 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 719 / 0 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10022411 [exp] 716 / 0 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 679 / 0 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10030251 [exp] 485 / 4e-170 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 479 / 1e-167 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 213 / 2e-60 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 212 / 2e-60 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 199 / 9e-56 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.001G090300.1 pacid=42787590 polypeptide=Potri.001G090300.1.p locus=Potri.001G090300 ID=Potri.001G090300.1.v4.1 annot-version=v4.1 ATGTCTGTTGTTGATGTTGGTTTGAGTCCGATTTTTAAAGAATCAGGTCATTTTCTTCCTGGTTATTGTGGTCAAAAGGGACCAGTAATCGAGGATTCAT CGATTCTAATTTATATTAGCGTGGGTGGTTCTTCAATTCCTATGAGGGTTTTCGAGTCTGATTCTATAGCTGCAGTGAAGCTAAGGATTCAGACAAGGAA AGGTTTTGTAGTGAATAAGCAGAAGTTAGTTTTTGGAGGGAGGGAATTGGCAAGAAATGATTCTCTTGTTAAGGATTATGGGGTCACTAGGGGCAATGTC TTGCACTTGGTTCTCAAGCTCTCTGATCTCTTGTTTGTCATTGTAAGGACCAATTCTGGAGAGGAATTTGAGTTTCATGTGGATAGGTTTAGGAATGTTG GGTACATAAAGCAACGAATATTTAAAGAAGGTAAAGGATTTGTTGATGTTGAGGACCAGGAGATCTTTTTTAATGGAAAAAAGCTTGATGATCAGAAAAT TGTTGATGATATATGTAATGATAATGATGCTGCCATCCATTTGTTGGTTGAAAAATCTGCCAAAGTGAGGGCTAAGCCTTTGGAAAAGGATTTTGAGATT TTGGTAGTGGCATCAAATTCCACTGAGAAGAGAGATAGGTCAATTGATGGAGGAGAGAACCGATCCGAAGAGGTTCTTGTTCTCTCAAAGGAGCGATCTG GCAGAAATTTCATGCTGGAACCGGTTATTGTTAATCCTAAGGTGAAGCTGAATTCGGTTTTTTGGAACATGATTAACTCTGCACTTGGTGGATTGGAGAA AGGTAATGCACCCATCCGATCTTCTGAGGGAACAGGAGGGACTTACTTTTTGCAGGATCCATCAGGTCAGGAGTTTGTATCTGTTTTTAAGCCTGTTGAT GAGGAGCCTATGGCTGTGAATAACCCCCAGGGGCTGCCCGTGTCATCGAATGGTGAGGGTTTAAAAAGGGGGACAAGGGTAGGAGAAGGAGCATTGAGGG AAGTTGCGGCTTACATATTGGATCATCCAAGGAGTGGTCCACGGGCAGTAAATGGAGAAACTATAGGCTTTGCTGGGGTCCCCCCTACAGTCATCGTTCA ATGCTTGCACAAAGGATTTAACCATCCAGAAGGGTTTGAAAATGCAATGGAGTATGCCAAGATCGGGTCTTTACAGATGTTTATGAAGAACGAGGGGAAC TGTGAGGACATCGGTCCCGGGGCTTTCCCGGTGGAGGAGGTGCACAAAATCAGTGTGTTCGATATAAGAATGGCCAATACAGATAGGCATGCTGGGAATA TATTGATTAGCACAGGGGAGGATGGTCAAACAATACTCATTCCAATTGATCATGGTTACTGCTTGCCTGAAAAATTTGAAGATTGCACATTTGACTGGCT TTACTGGCCACAAGCCCGCCAGCCGTACTCACCCGAAGTTGTTGACTACATAAACTCACTGGATGCTGAACATGACATCGCACTAGTGCAATTCTATGGG TGGAATATTCCTCTTGAGTGTGCCCGCGTACTTCGTATCTCCACTATGCTTCTGAAGAAAGGGGTAGAGAGAGGTCTCACTCCTTTTGCTATCGGAAGCA TCATGTGTAGAGAGAACTTGAATAAGGAATCTGTGATCGAGGAGATTATTCGTGAAGCAGAAGATTCCTTGCTCCCTGGTATGAGTGAAGCTGCATTTCT CGAAGCTGTCTCCAATATCATGGACTACCGACTTGATGAATTCACAGGATAA
AA sequence Show only first row Show all	>Potri.001G090300.1 pacid=42787590 polypeptide=Potri.001G090300.1.p locus=Potri.001G090300 ID=Potri.001G090300.1.v4.1 annot-version=v4.1 MSVVDVGLSPIFKESGHFLPGYCGQKGPVIEDSSILIYISVGGSSIPMRVFESDSIAAVKLRIQTRKGFVVNKQKLVFGGRELARNDSLVKDYGVTRGNV LHLVLKLSDLLFVIVRTNSGEEFEFHVDRFRNVGYIKQRIFKEGKGFVDVEDQEIFFNGKKLDDQKIVDDICNDNDAAIHLLVEKSAKVRAKPLEKDFEI LVVASNSTEKRDRSIDGGENRSEEVLVLSKERSGRNFMLEPVIVNPKVKLNSVFWNMINSALGGLEKGNAPIRSSEGTGGTYFLQDPSGQEFVSVFKPVD EEPMAVNNPQGLPVSSNGEGLKRGTRVGEGALREVAAYILDHPRSGPRAVNGETIGFAGVPPTVIVQCLHKGFNHPEGFENAMEYAKIGSLQMFMKNEGN CEDIGPGAFPVEEVHKISVFDIRMANTDRHAGNILISTGEDGQTILIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPEVVDYINSLDAEHDIALVQFYG WNIPLECARVLRISTMLLKKGVERGLTPFAIGSIMCRENLNKESVIEEIIREAEDSLLPGMSEAAFLEAVSNIMDYRLDEFTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.001G090300 [exp]	0	1
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.004G204400 [exp]	2.44	0.8853	SLY1.1
AT1G12310			Calcium-binding EF-hand family...		Potri.003G115000 [exp]	10.04	0.8942
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	16.00	0.8796
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	22.44	0.8691
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	24.55	0.8849
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.008G155500 [exp]	25.63	0.8601	Pt-PBD2.3
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108880 [exp]	27.22	0.8538
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	28.80	0.8593
					Potri.001G022601 [exp]	34.49	0.8536
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	37.34	0.8710

Compare expression of checked genes

Potri.001G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.