Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23900 335 / 1e-117 Nucleoside diphosphate kinase family protein (.1) AT4G11010 332 / 2e-116 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23895 330 / 4e-112 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT4G09320 187 / 4e-60 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT5G63310 181 / 4e-57 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT1G17410 84 / 6e-20 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140600 [exp] 355 / 1e-125 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.014G049900 [exp] 195 / 1e-63 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.012G093800 [exp] 194 / 3e-62 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.002G138800 [exp] 186 / 3e-60 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 72 / 1e-15 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001824 [exp] 343 / 1e-120 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10003878 [exp] 332 / 6e-116 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10032392 [exp] 293 / 2e-101 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10024286 [exp] 186 / 4e-60 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10017931 [exp] 188 / 1e-59 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10014787 [exp] 188 / 1e-59 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10003844 [exp] 182 / 2e-58 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10023076 [exp] 172 / 1e-52 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [poplar] [flax] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Potri.001G091001.1 pacid=42788979 polypeptide=Potri.001G091001.1.p locus=Potri.001G091001 ID=Potri.001G091001.1.v4.1 annot-version=v4.1 ATGAGCTCTCAGATTTGCAGATCTGCTTCTAGAGCTGCGAGGTCTCTTCTCTCTTCAGCTTCTAAAACCTCTCGCTTCTACTCTGAAGGGAGAGCTGCAG CGGCAGTGGTGGCAGTTTCACTTGGTGGAAAGTTGCCTCTCCTATCCTCGGCTTATGGAAGGACTGGTTCTTCAAATCTGGCTAGACAGTGGATTTCTGG GGCTCTTGCAATTCCTGCTGGAGTATACATGCTCCAAGAACAGGAGGCACATGCTGCAGAGCTGGAGCGAACTTTTATTGCCATCAAGCCTGATGGAGTG CAGCGAGGGCTGATTTCAGAAATCATATCCCGTTTCGAGCGTAAAGGGTTTAAGCTTGTGGCCATTAAGATAGTGGTTCCTTCTAAGGACTTTGCTCAGA AGCATTATCATGATCTGAAGACAAGACCCTTTTTTGATGGTCTTTGTGACTTCCTTAGCTCTGGTCCAGTTGTTGCCATGGTCTGGGAAGGAGAAGGGGT GATCAAATATGGTCGGAAACTCATTGGAGCCACAGATCCTCAGAAATCAGAGCCTGGAACCATCAGAGGTGATCTAGCCGTTGTTGTTGGAAGAAATATC ATTCACGGAAGCGATGGCCCCGAGACTGCCAAGGAGGAGGTTAACTTGTGGTTCAAACCAGAGGAATTGGTTAATTACACTGGCAATGCAGAGAAGTGGA TCTATGGGGTCAACTGA
AA sequence Show only first row Show all	>Potri.001G091001.1 pacid=42788979 polypeptide=Potri.001G091001.1.p locus=Potri.001G091001 ID=Potri.001G091001.1.v4.1 annot-version=v4.1 MSSQICRSASRAARSLLSSASKTSRFYSEGRAAAAVVAVSLGGKLPLLSSAYGRTGSSNLARQWISGALAIPAGVYMLQEQEAHAAELERTFIAIKPDGV QRGLISEIISRFERKGFKLVAIKIVVPSKDFAQKHYHDLKTRPFFDGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNI IHGSDGPETAKEEVNLWFKPEELVNYTGNAEKWIYGVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23900			Nucleoside diphosphate kinase ...		Potri.001G091001 [exp]	0	1
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	3.46	0.8878
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057800 [exp]	6.00	0.9017	Pt-CCR.6
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Potri.005G093600 [exp]	9.16	0.8952
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	11.48	0.8781
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229325 [exp]	11.61	0.8805
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	12.48	0.8755	CYP81R2v2,IFS1.55
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	13.96	0.8737
AT3G63170			Chalcone-flavanone isomerase f...		Potri.002G052200 [exp]	15.96	0.8677
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	17.02	0.8491
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	17.94	0.8686

Compare expression of checked genes

Potri.001G091001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.