Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23895 311 / 4e-108 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140500 [exp] 412 / 9e-148 AT4G23895 284 / 3e-97 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023081 [exp] 312 / 4e-108 AT4G23895 308 / 2e-106 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) Lus10032387 [exp] 275 / 2e-93 AT4G23895 308 / 3e-106 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G091100.4 pacid=42790427 polypeptide=Potri.001G091100.4.p locus=Potri.001G091100 ID=Potri.001G091100.4.v4.1 annot-version=v4.1 ATGGATGATATTCCTGGGAGGTTGAATATAGTCCCTGATCACTTTCATGTATCAACTTCTAGTGAGGACACTCCTCAAAACATAACTTCATCTATCCAAC AGCCCAGAATTGATAATTCATCCAGCTCAAATAGTCGTTTCTGGTCTGGAAGAAAACTAAGAAGTGCTGCATTCATGCTGAATTTGTTTAACCTACAGAG GCTGTCATGGGGTTCTAGCGCTGATGTTCAGGAAAAGGTCGAGTTATCCGTCACAGAGTTAGAATCACTTCGATCAGAACTTGCATATTTAGAAGAGAGG GAAGCTCACTTGAAAGCTCAGTTGGAACATGTTGATGAAGTTCTGCGCTCTGCTCGGTTCTCTGGTTATTTGTACATCCGAACTAGATGGACAGCTCTAC CTGGGGAGCCGCCGCCACTTGATGATACTGATGTGGACGATTGGCTTCCTCGCTTTGTTGTCCTTAATGGACCATGCATCTTCTTCTATTTGTTGTCCAC AGATTTCAGTCCTCAAGATTCCACTCTACTTGCCGATATTGTTGAAGTAGGCTCTCTGCCAAGCTTTACACGGGAGCATGAAGAGACATTGTATTCCTCA TATATCTTAACTCGTCAAGGTCTGAGATATGAGTGCTCAAGTGTTTCCGAAGTACAGGTTGATTCATGGCTAAAGGTATTGCAAACTGACATCAAGTTGG TTTCTGAGACAAAAGTTCCCTCATGGTTCCAGTGA
AA sequence Show only first row Show all	>Potri.001G091100.4 pacid=42790427 polypeptide=Potri.001G091100.4.p locus=Potri.001G091100 ID=Potri.001G091100.4.v4.1 annot-version=v4.1 MDDIPGRLNIVPDHFHVSTSSEDTPQNITSSIQQPRIDNSSSSNSRFWSGRKLRSAAFMLNLFNLQRLSWGSSADVQEKVELSVTELESLRSELAYLEER EAHLKAQLEHVDEVLRSARFSGYLYIRTRWTALPGEPPPLDDTDVDDWLPRFVVLNGPCIFFYLLSTDFSPQDSTLLADIVEVGSLPSFTREHEETLYSS YILTRQGLRYECSSVSEVQVDSWLKVLQTDIKLVSETKVPSWFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Potri.004G003800 [exp]	1.00	0.8498
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147702 [exp]	3.74	0.7997
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.001G246300 [exp]	6.92	0.7921
AT1G32460			unknown protein		Potri.001G145066 [exp]	7.61	0.8256
AT3G59390			unknown protein		Potri.019G051300 [exp]	7.74	0.8006
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	8.06	0.7323
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.001G006300 [exp]	12.48	0.7828
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	12.60	0.8138
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	12.80	0.8128
AT1G06060			LisH and RanBPM domains contai...		Potri.005G233000 [exp]	13.41	0.7867

Compare expression of checked genes

Potri.001G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.