Plant FIBer expression Database

Potri.001G091600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23860 444 / 4e-154 PHD finger protein-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G140000
[exp]
719 / 0 AT4G23860 460 / 1e-160 PHD finger protein-related (.1.2.3)
Potri.017G101100
[exp]
42 / 0.0007 AT3G02260 6576 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023084
[exp]
554 / 0 AT4G23860 483 / 1e-169 PHD finger protein-related (.1.2.3)
Lus10032384
[exp]
541 / 0 AT4G23860 463 / 9e-162 PHD finger protein-related (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02207 zf-UBR Putative zinc finger in N-recognin (UBR box)
Representative CDS sequence
>Potri.001G091600.2 pacid=42790985 polypeptide=Potri.001G091600.2.p locus=Potri.001G091600 ID=Potri.001G091600.2.v4.1 annot-version=v4.1
ATGGATGGTGTATTTGATGATGAGGTCGAACAAACTGTTACTATTGATGAGTACCTCAACAACGTTGAGGCAGAGGAATTGAATGCAGATTTGGTTTTGG
GTGGAGATGAAGGAGAGGAGTGCACTTATAACATGGGATATATGAAGAGACAAGCTATTTTTTCATGTCTGACTTGCACTCCGGATGGAAATGCTGGAGT
TTGCACTGCTTGCAGTTTGTCTTGCCATGATGGCCATGAGATTGTGGAGTTATGGACCAAGAGAAATTTTCGGTGCGATTGTGGCAATTCAAAATCTGGG
GAGTTCGTCTGCAAGCTTTTCCCGAAGAAAAATGTGGAAAATGCTGAAAATTCGTATAATCATAACTTTAAAGGTTTATACTGCTCTTGTGATCGGCCCT
ATCCTGATCCAGATGCTAAGGCACAAGAAGAGATGATACAGTGCATTATGTGCGAAGACTGGTTCCATGAGGAGCATCTTGGTCTAGAGTCTTTCAATGA
GATCCCGAGAGACGAGGAAGGAGAACCTCTGTATGAGGATTTTATATGCAAGACATGCTCAACAGTTTGTTCTTTTCTGACACTATATCCTCAGACGATT
TGGGAAGCTGGGGGGCAGAAAGGTGATGCCACTGCTAGTAATGCTAAAAATAAAGGTGTGTTGGAAAATGTCTCTTCAGCTTGTGGTTCTGGGAAGCTTG
AGATTGATATTTGTGCTCATGATTCTTCTGAAAAGGATAATGCAACAGCTAATTCTAATTGTCAATCTGTGGCTGCTGGAAATGCATCTGTTGTTGGAGA
AAGTTCTGGGAAGAGTAGTGGGCCAAATGACTCAGACCAATGCACAAAAGATACCAATCTTCATACTACGTGTGTTCTTGGAATCAATGTGGAAGTTACT
TCACCTGTTTCAGAAGGAAAACCATTATTTCTTTCCAAAAGCTGGAGGGACATCCTGTGCAGATGTGAAAAATGCTTGGATATGTACAACCAGAAGCAAA
TAAATTATCTCCTTGACAGGGAGGACACAATTGCTGAGTATGAGAAAATGGCCAAACAGAAGAGGGAAGAAAAATTGCAGCAACAGGAGGGTGCTGAGTT
GAGTTTTTTCAATAAACTTGGCCATATAGAGAAGGTGGAGATTCTAAATGGTATTGCAGACTTTAAGGATGAGTTCTGTTCCTTTTTGGAGTCATTTGAT
ATGTCAAAGACAATCACATGTTCTGATGTCCACCAGATTTTTGAAAATCTTGCAAAGAAGCGTCGGCGAATGCAGTGA
AA sequence
>Potri.001G091600.2 pacid=42790985 polypeptide=Potri.001G091600.2.p locus=Potri.001G091600 ID=Potri.001G091600.2.v4.1 annot-version=v4.1
MDGVFDDEVEQTVTIDEYLNNVEAEELNADLVLGGDEGEECTYNMGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKSG
EFVCKLFPKKNVENAENSYNHNFKGLYCSCDRPYPDPDAKAQEEMIQCIMCEDWFHEEHLGLESFNEIPRDEEGEPLYEDFICKTCSTVCSFLTLYPQTI
WEAGGQKGDATASNAKNKGVLENVSSACGSGKLEIDICAHDSSEKDNATANSNCQSVAAGNASVVGESSGKSSGPNDSDQCTKDTNLHTTCVLGINVEVT
SPVSEGKPLFLSKSWRDILCRCEKCLDMYNQKQINYLLDREDTIAEYEKMAKQKREEKLQQQEGAELSFFNKLGHIEKVEILNGIADFKDEFCSFLESFD
MSKTITCSDVHQIFENLAKKRRRMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23860 PHD finger protein-related (.1... Potri.001G091600
[exp]
0 1
AT5G22220 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2... Potri.004G200800
[exp]
1.00 0.7170 2,Pt-E2F1.2
AT5G22820 ARM repeat superfamily protein... Potri.009G151100
[exp]
15.03 0.6808
AT1G21840 UREF urease accessory protein F (.1... Potri.001G224400
[exp]
16.73 0.6348
AT5G22360 ATVAMP714 vesicle-associated membrane pr... Potri.009G018900
[exp]
18.33 0.6370
Potri.001G142300
[exp]
20.04 0.6568
AT5G06560 Protein of unknown function, D... Potri.006G199000
[exp]
21.65 0.6316
AT1G53910 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) Potri.003G071700
[exp]
21.90 0.6061 ERF39,ERF1.4
AT3G07940 Calcium-dependent ARF-type GTP... Potri.003G198301
[exp]
45.78 0.6055
AT3G51620 PAP/OAS1 substrate-binding dom... Potri.013G154900
[exp]
47.49 0.5880
AT1G09290 unknown protein Potri.010G099500
[exp]
55.67 0.5764

Potri.001G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.