Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23840 481 / 6e-164 Leucine-rich repeat (LRR) family protein (.1) AT1G15740 88 / 4e-18 Leucine-rich repeat family protein (.1) AT5G17680 47 / 4e-05 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G58530 45 / 0.0001 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061700 [exp] 93 / 1e-19 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.005G008600 [exp] 59 / 1e-08 AT1G74190 310 / 1e-91 receptor like protein 15 (.1) Potri.016G128400 [exp] 54 / 2e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G007900 [exp] 53 / 6e-07 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.011G054500 [exp] 52 / 1e-06 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.017G136266 [exp] 50 / 4e-06 AT3G14470 412 / 2e-126 NB-ARC domain-containing disease resistance protein (.1) Potri.005G011600 [exp] 49 / 1e-05 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.005G009700 [exp] 48 / 2e-05 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.003G028557 [exp] 47 / 3e-05 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001831 [exp] 633 / 0 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10003886 [exp] 370 / 6e-124 AT4G23840 281 / 8e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10035912 [exp] 115 / 8e-27 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1) Lus10038107 [exp] 111 / 1e-25 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10025751 [exp] 109 / 7e-25 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10008036 [exp] 108 / 2e-24 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10011626 [exp] 45 / 0.0002 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10034790 [exp] 43 / 0.0008 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10012294 [exp] 42 / 0.0008 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G092000.1 pacid=42790424 polypeptide=Potri.001G092000.1.p locus=Potri.001G092000 ID=Potri.001G092000.1.v4.1 annot-version=v4.1 ATGGAGATAGAGACAGAGTCTCGATTGGTTCGCTTATGCATAGAAGCAGCGTGTGAAAGCAGAGAAAGCGTTGAAAAATGGAGGAAACAGCGACGGACTC TCAATTCTATGCCTTCTCCTCTCGCCGACGCACTTCTCCGCCGCCTCTTCCTCCGCCGCCTCCTCTTCCCTTCTCTTCTGGAAGTTTTCAAACGTAGTGT GGAGGTCGTTGATCTTAAAGGTGAAAACAATGTGGATGCGGAGTGGATGGCGTACTTAGGAGCATTTCGTTACTTGCGCTCCTTGAATCTTGCTGATTGC CATAGAATCAATAATTCTGCCCTTTGGTCTCTAGTTGGGATGACTAGTTTAAAGGAGGTGGATATTTCTAGATGTGCCAAGGTTACTGATGCTGGTATTA GGCATCTTGTATCAATTTCAACTTTGCAAATACTACGGATTTCAGAAACAGGAGTAACTGCTGATGGTATTAAACTTCTCTCCTCACTTACAACATTGTT TGTTTTGGACTTGGGTGATTTGCCTGTCACTGATACAGCGTTGAGTTCTCTCCAGGCGTTGACAAAGCTAGAGTATCTTGACCTTTGGGGAAGTAACATA TCTAACAAAGGGGCTACTGTTCTTCAAAAATTTCCCAAGTTGAAGTTTCTCGGTCTGGCCTGGACCAATGTTACAATATTGCCAAATTTGTCATCTCTTG AATGCTTAAACTTGAGTAACTGCACCATTAATTCTGTACTTCAAGGTAATGGGAATAAAGCTCATTTGACTAAGCTTATATGCTCTGGAGCTACATTCAC CAACGAGGCTGAAGCATTCTTGTATTTCAATACATGCTTCCTATCTTTTCTGGATGTATCCAATTCATCTCTCAATGGATTCTACTTCTTACATCATTTG AAAGCAATGGAATATTTGGATCTCAGCAGTAGCATGATAGGTGATGATTCAATTGAAGCGGTTGCAAGTATAGGAGCAATTTTGAGAAATTTAAATCTCG GCAAAACAAGAGTCACCTCTGCTGGGGTGGCAATATTAGTTGGTCATGTTCCAAAGCTTGAGAATTTATCATTATCTCACACTCTAGTAGATGATTTGGC CATGTCATATATTGGCATGATGCCTTCGCTGAAGCTTGTTGATTTAAACAATACAATCATCAATGGTTTCATTCACCAGGATGGTGCTGGGCCAAATTTG ATTTCCTCACTGACAGCACTACATAGCCTTAAAGGTTTGGAAAGTTTGAATCTAGAATGCGCCAACATCAAGGATGCAGCTGTAGACCCCTTATCAAACT TTCAAGAATTGAGGCTTTTATCTCTCAAAAGTCCTTCCCTTACAGACATCTCCCTTTACCACTTGTCATCTCTACCAAAGATAAGAAATCTAGGCATTCG CGATGCCGTGCTGACTGACTCTGGGCTATTTTCATTCAGACCACCAGCAACTCTCGAAATGCTGGACCTCAGGGGTTGTTGGCTCTTAACTGAGGATGCT ATCTTGTCATTTCGTAAAAGACATCCTCTAATTGAATTAAGGCATGAGCATGTTGTCTCTACATCAGATCAAACTGCCCGCCACCGTCTGACTCCACCAC GAACATTTCTAAGACCTCCACAAGTAAACCAGAAACAGGAAAAGTTGATTGTGTCTCAGTATTTTATAGATCAGAGACTGAAGTATACCAGAGAGGAGCT TCTTGCATTACAGTTTCAATCCTCATCTCTCGGGTCTCCTTTTGACAAAAGCCATGCCAAACCCCAGATGCAGTCGGATTGA
AA sequence Show only first row Show all	>Potri.001G092000.1 pacid=42790424 polypeptide=Potri.001G092000.1.p locus=Potri.001G092000 ID=Potri.001G092000.1.v4.1 annot-version=v4.1 MEIETESRLVRLCIEAACESRESVEKWRKQRRTLNSMPSPLADALLRRLFLRRLLFPSLLEVFKRSVEVVDLKGENNVDAEWMAYLGAFRYLRSLNLADC HRINNSALWSLVGMTSLKEVDISRCAKVTDAGIRHLVSISTLQILRISETGVTADGIKLLSSLTTLFVLDLGDLPVTDTALSSLQALTKLEYLDLWGSNI SNKGATVLQKFPKLKFLGLAWTNVTILPNLSSLECLNLSNCTINSVLQGNGNKAHLTKLICSGATFTNEAEAFLYFNTCFLSFLDVSNSSLNGFYFLHHL KAMEYLDLSSSMIGDDSIEAVASIGAILRNLNLGKTRVTSAGVAILVGHVPKLENLSLSHTLVDDLAMSYIGMMPSLKLVDLNNTIINGFIHQDGAGPNL ISSLTALHSLKGLESLNLECANIKDAAVDPLSNFQELRLLSLKSPSLTDISLYHLSSLPKIRNLGIRDAVLTDSGLFSFRPPATLEMLDLRGCWLLTEDA ILSFRKRHPLIELRHEHVVSTSDQTARHRLTPPRTFLRPPQVNQKQEKLIVSQYFIDQRLKYTREELLALQFQSSSLGSPFDKSHAKPQMQSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	0	1
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.014G118100 [exp]	3.16	0.8674
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	3.74	0.8648
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	4.00	0.8367
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	5.47	0.8386
AT1G45231			S-adenosyl-L-methionine-depend...		Potri.014G028000 [exp]	7.07	0.8238
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	7.74	0.8461
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.001G471300 [exp]	9.00	0.7932
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	10.72	0.8011
AT4G34280			transducin family protein / WD...		Potri.007G051500 [exp]	11.09	0.7863
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	11.31	0.8558

Compare expression of checked genes

Potri.001G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.