Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41850 313 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1) AT5G19630 45 / 9e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T056064 [exp] 40 / 0.0004 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G212400 [exp] 40 / 0.0004 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021037 [exp] 338 / 8e-118 AT5G41850 305 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10003892 [exp] 327 / 5e-114 AT5G41850 297 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) Lus10003902 [exp] 266 / 5e-91 AT5G41850 231 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10023100 [exp] 206 / 2e-65 AT5G41850 172 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10032373 [exp] 195 / 2e-62 AT5G41850 163 / 6e-50 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G092800.2 pacid=42788470 polypeptide=Potri.001G092800.2.p locus=Potri.001G092800 ID=Potri.001G092800.2.v4.1 annot-version=v4.1 ATGGATTCTTCACCTCCAACAAAGAGAAGGCGCAAGACCAAGAGTGAAGGCACAAACGACAAGTCGTCGTCCTCGCCTGTGGTTGTCTTTGCTCATGGCG CTGGTGCTCCGTCCTCTTCAGATTGGATGCTCAGATGGAAGGAGATGTTAAAGAATGCTTTGGATGCTGTTGAAGTTGTCACATTTGACTATCCCTATAT TGCTGGTGGGAAAAAAAGGGCTCCTCCAAAAGCGGAGAAATTGGTGGAGTTTCATAAAGATATTGTGAAAAAGACTACTGATAAGTACCCCGCTCATCCT CTTATCTTGGCTGGAAAATCCATGGGTTCAAGAGTGAGCTGCATGGTTGCTGCCGAGGTTGACATAGATGCTTCAGCAGTCATTTGCTTGGGATATCCAC TTAAGGCCATGGGTGGAGCTGTGCGGGATGAGACTCTATTGCAACTTACTGTCCCTGTCATGTTTGTACAGGGTAGCAAAGATGGGCTTTGTCCCCTTGA AAAGCTGGAAGCTGTTTGCAAGAAGATGAAATCTCACAATGAGTTGCATGTGATTAATGGTGGTGACCACTCTTTTAAGATTGGCAAAAAGCATTTGCAA ATAAAGGGTTCAACCCAAGATCAAGCTGAAGATCTTGCTGTTCAGGGTGTTTCATCATTTGTCTCCAGGTGTCTTAAAGGAAAGTGA
AA sequence Show only first row Show all	>Potri.001G092800.2 pacid=42788470 polypeptide=Potri.001G092800.2.p locus=Potri.001G092800 ID=Potri.001G092800.2.v4.1 annot-version=v4.1 MDSSPPTKRRRKTKSEGTNDKSSSSPVVVFAHGAGAPSSSDWMLRWKEMLKNALDAVEVVTFDYPYIAGGKKRAPPKAEKLVEFHKDIVKKTTDKYPAHP LILAGKSMGSRVSCMVAAEVDIDASAVICLGYPLKAMGGAVRDETLLQLTVPVMFVQGSKDGLCPLEKLEAVCKKMKSHNELHVINGGDHSFKIGKKHLQ IKGSTQDQAEDLAVQGVSSFVSRCLKGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41850			alpha/beta-Hydrolases superfam...		Potri.001G092800 [exp]	0	1
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.010G081500 [exp]	9.16	0.7163	Pt-DMC1.2
AT1G13380			Protein of unknown function (D...		Potri.010G124800 [exp]	9.27	0.7268
AT4G18590			Nucleic acid-binding, OB-fold-...		Potri.010G239200 [exp]	10.14	0.7744
AT3G08880			unknown protein		Potri.012G107200 [exp]	13.78	0.7082
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.017G068400 [exp]	16.61	0.7208
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	16.97	0.7027
AT4G21450			PapD-like superfamily protein ...		Potri.019G116400 [exp]	23.55	0.7170
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	24.79	0.6392
AT3G02430			Protein of unknown function (D...		Potri.013G116300 [exp]	25.69	0.6798
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	34.46	0.7205

Compare expression of checked genes

Potri.001G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.