Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 199 / 8e-61 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G27250 191 / 1e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G45400 188 / 1e-56 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 177 / 1e-52 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 146 / 6e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 145 / 2e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 143 / 2e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 141 / 4e-39 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G66800 140 / 7e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 139 / 2e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138400 [exp] 613 / 0 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.005G229500 [exp] 206 / 2e-63 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.004G030700 [exp] 202 / 7e-62 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G415500 [exp] 201 / 1e-61 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G033600 [exp] 199 / 4e-61 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 193 / 7e-59 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 191 / 8e-58 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 189 / 2e-57 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 187 / 9e-57 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023096 [exp] 417 / 2e-146 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1) Lus10032370 [exp] 400 / 1e-139 AT1G61720 171 / 3e-50 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032369 [exp] 303 / 3e-102 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10041031 [exp] 192 / 2e-58 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10020072 [exp] 185 / 2e-55 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004028 [exp] 182 / 1e-54 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 177 / 2e-52 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 174 / 3e-51 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023097 [exp] 168 / 6e-51 AT1G09510 86 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021294 [exp] 162 / 3e-46 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.001G093300.2 pacid=42791787 polypeptide=Potri.001G093300.2.p locus=Potri.001G093300 ID=Potri.001G093300.2.v4.1 annot-version=v4.1 ATGGCCAAGCGCTGCACAAAAGTCTGTGTGACAGGAGGTTCTGGATATATTGGTTCCTGGCTCGTCATGAAGCTGCTGGGGAAAGGCTATACTGTCCATG TAACATTGAGAAGTTTGGGGGACAAATCCAAAGTAGGCCTCCTCAAGTCCCTACCAAACGCAGACACCAAATTAGTACTGTTCCAAGCTGATATATACAA TCCGAATGAGTTTGAAGAAGCAATTCAAGGGTGTGAATTTGTTTTCCATGTTGCCACTCCAATGCAACATGATCCCAAAAGCATTCAGTACAAAGATAGA GTGGAAGCAACCATTGCTGGAGTGAGGGCTATAGCTGATATTTGCGTCAAATCACGAACTGTTAAGCGTCTCATCTACACCGCATCTGTGGTGGCAACAT CACCATTGAATGAAGATGGAAGTGGCTATAAATCTTGCACGGATGAATCCTGTTGGACTCCTTCTGATCTATCACTCACTTATGCCAATGATTATGTTCT GGAATATACAAGTGCAAAAACATTAGCAGAGAAAGAGGTTTTGAGCTATAATGAAATTGGGGATGCTAAACTTGAAGTGGTGACTCTTGCTTGTGGTCTA GTGGGAGGAGAGACTATACTTTCCCATCTACCTTTGAGTGTACAAGTGATTTTTTCACAGATTTCAGGCAACATATTTGGTTACTATCAAGGTTTGAAGT TCATGGAAGAGCTTTTGGGTTCAGTTCCTCTTGTTCACATTGATGATGTTTGTGAAGCACATATATTTTGCATGGAAAAGCCATCAATGAAAGGTAGATT CCTCTGTTCAGCTGCCGATCCAACTGTCAAAGAAATTAAAACTCACCTTGAAGAAAACCATCCAGAATTCATGATAGAAGAAAAATTCAGGGAAGAACCG GAGACCAGAGGAATCAAATGTGATTCATCAAAGTTGATCAAGATGGGCTTTGAGTATAAATTTGACATGAGAAAAATCATTGATGATAGCTTGGAATGTG GAAAAAGGCTCGGAGCTCTCCAATTAGTTAATCAAATTCAGAACTCAACCACATAA
AA sequence Show only first row Show all	>Potri.001G093300.2 pacid=42791787 polypeptide=Potri.001G093300.2.p locus=Potri.001G093300 ID=Potri.001G093300.2.v4.1 annot-version=v4.1 MAKRCTKVCVTGGSGYIGSWLVMKLLGKGYTVHVTLRSLGDKSKVGLLKSLPNADTKLVLFQADIYNPNEFEEAIQGCEFVFHVATPMQHDPKSIQYKDR VEATIAGVRAIADICVKSRTVKRLIYTASVVATSPLNEDGSGYKSCTDESCWTPSDLSLTYANDYVLEYTSAKTLAEKEVLSYNEIGDAKLEVVTLACGL VGGETILSHLPLSVQVIFSQISGNIFGYYQGLKFMEELLGSVPLVHIDDVCEAHIFCMEKPSMKGRFLCSAADPTVKEIKTHLEENHPEFMIEEKFREEP ETRGIKCDSSKLIKMGFEYKFDMRKIIDDSLECGKRLGALQLVNQIQNSTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	0	1
AT1G48450			Protein of unknown function (D...		Potri.015G031200 [exp]	1.00	0.9792
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032733 [exp]	2.44	0.9784
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	3.46	0.9660
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	3.87	0.9673
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	5.00	0.9658
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	6.00	0.9508
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	7.00	0.9487
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.009G159800 [exp]	8.66	0.9381
AT1G47510		AT5PTASE11, 5PT...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.014G039800 [exp]	11.09	0.9229
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	12.72	0.9459

Compare expression of checked genes

Potri.001G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.