Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41810 135 / 1e-39 unknown protein AT1G64340 113 / 4e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094000 [exp] 39 / 0.0002 AT3G61660 55 / 1e-10 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003901 [exp] 138 / 9e-42 AT5G41810 119 / 3e-33 unknown protein Lus10001907 [exp] 133 / 9e-40 AT5G41810 117 / 1e-32 unknown protein Lus10032366 [exp] 40 / 0.0002 AT3G61660 61 / 1e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G093500.1 pacid=42792252 polypeptide=Potri.001G093500.1.p locus=Potri.001G093500 ID=Potri.001G093500.1.v4.1 annot-version=v4.1 ATGGAGAAGATTCAAGGAAAGAATAAACGCCAAGAACAGAAACAAAACCAAAACCAAAACCAAAACCAAAACAAAAACCAAAACCAAAAAACCCTACAAG CTAATAATAAGGCTCTTGTATGGGATTGTGGAAGCTCACTGTATGACTCCTTTGAGCTTAAGTCTTTCGAGCGTCAACTTGATTCAGCAATTAATTCAAG AACCTTATCCATGCCTCATTTTCCTGATCGTCAAGTACTAACTACTCCTCCTCCACCACCTAAGAAACCTTCAAAGATTTCGCGGTCGCTCAACAAATTC CTGAAATCCATGTTCAAATCTAAACAAAATTCTAGCACCATGTTTCGGGTTCAAGAGCGATTGCAAGATGAATACTACGTCATCTATGATAAGTCCGGAG CTCTTACAACCATTCCTGAAGTGCCTGAAATTGATTTTGGAGGGTTTTCGCCTGAGATTAATTCACTGGTAAGAAAGACTGTATCCGACAGGTTTACTGC CGCCTCCATCGGTATTTCATGA
AA sequence Show only first row Show all	>Potri.001G093500.1 pacid=42792252 polypeptide=Potri.001G093500.1.p locus=Potri.001G093500 ID=Potri.001G093500.1.v4.1 annot-version=v4.1 MEKIQGKNKRQEQKQNQNQNQNQNKNQNQKTLQANNKALVWDCGSSLYDSFELKSFERQLDSAINSRTLSMPHFPDRQVLTTPPPPPKKPSKISRSLNKF LKSMFKSKQNSSTMFRVQERLQDEYYVIYDKSGALTTIPEVPEIDFGGFSPEINSLVRKTVSDRFTAASIGIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41810			unknown protein		Potri.001G093500 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	3.00	0.9029
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Potri.017G082000 [exp]	3.16	0.8511
AT4G31250			Leucine-rich repeat protein ki...		Potri.006G279300 [exp]	4.12	0.8403
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	5.47	0.8871
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	7.48	0.8845
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.004G148300 [exp]	7.74	0.8732
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	10.00	0.8798
AT2G23970			Class I glutamine amidotransfe...		Potri.018G102000 [exp]	18.70	0.8646
AT3G14470			NB-ARC domain-containing disea...		Potri.009G056200 [exp]	24.49	0.8315
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.015G011300 [exp]	24.85	0.7735

Compare expression of checked genes

Potri.001G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.