Plant FIBer expression Database

Potri.001G093650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATMG00960 44 / 4e-06 ATMG00960.1, CCB203 Cytochrome C assembly protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G093650.1 pacid=42792058 polypeptide=Potri.001G093650.1.p locus=Potri.001G093650 ID=Potri.001G093650.1.v4.1 annot-version=v4.1
ATGTCAAGATTCAAATTGTTCTTGGTCCTAGTTAGAGACCATTGTGTTCGCTTTAGCGGTCCAACAAATATGCGAAATAGTGGTCTCTTTCTCTACTATG
GCTCTTTCTTCTCAAGTCAGGATGAGAAGAAAAAGGTAGGCGGCCACAAGCCGACCATTACAGGGGACCAAGACAAAAGGAATGAATTTGATTCATATCC
AGCTTTTCACAATGGTGTTAGAACCGTCTCGCTACGCTTTTCCTGGTGGTGGGGTGGTGTCCATGGGGAAAACAGTGAGTCTCCAATGAATGTTTTCTTT
CTCCTCCTCTCGAGCATGATATTGACAACTCATTTTTATAGTTAA
AA sequence
>Potri.001G093650.1 pacid=42792058 polypeptide=Potri.001G093650.1.p locus=Potri.001G093650 ID=Potri.001G093650.1.v4.1 annot-version=v4.1
MSRFKLFLVLVRDHCVRFSGPTNMRNSGLFLYYGSFFSSQDEKKKVGGHKPTITGDQDKRNEFDSYPAFHNGVRTVSLRFSWWWGGVHGENSESPMNVFF
LLLSSMILTTHFYS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G093650
[exp]
0 1
AT1G67550 URE urease (.1) Potri.008G177900
[exp]
12.28 0.7023
AT3G07870 F-box and associated interacti... Potri.008G216223
[exp]
21.49 0.6927
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.007G120900
[exp]
27.56 0.6613
Potri.014G104750
[exp]
38.89 0.6379
AT1G02460 Pectin lyase-like superfamily ... Potri.002G190600
[exp]
41.73 0.6397
AT2G17570 Undecaprenyl pyrophosphate syn... Potri.002G039400
[exp]
48.92 0.6307
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Potri.003G052150
[exp]
65.95 0.5695
AT4G02810 FAF1 FANTASTIC FOUR 1, Protein of u... Potri.002G053400
[exp]
80.94 0.6144
AT5G24040 Protein of unknown function (D... Potri.009G078900
[exp]
89.16 0.5733
AT3G09510 Ribonuclease H-like superfamil... Potri.004G015067
[exp]
93.97 0.6001

Potri.001G093650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.