Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 324 / 2e-106 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 318 / 6e-104 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT3G51880 56 / 4e-09 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT3G28730 52 / 9e-07 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) AT1G20696 48 / 1e-06 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 47 / 5e-06 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 43 / 9e-05 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT5G23420 44 / 0.0001 HMGB6 high-mobility group box 6 (.1.2) AT4G35570 42 / 0.0001 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138000 [exp] 546 / 0 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.005G101400 [exp] 46 / 6e-06 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 45 / 1e-05 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 45 / 2e-05 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G252600 [exp] 44 / 3e-05 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 44 / 7e-05 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.004G124000 [exp] 44 / 0.0003 AT3G28730 875 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.017G078500 [exp] 42 / 0.0007 AT3G28730 836 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001909 [exp] 381 / 9e-128 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 377 / 4e-126 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 338 / 3e-111 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033954 [exp] 207 / 4e-61 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023091 [exp] 184 / 1e-54 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023090 [exp] 142 / 8e-39 AT4G23800 195 / 1e-59 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) Lus10033951 [exp] 142 / 2e-37 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10030738 [exp] 53 / 7e-08 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 51 / 7e-08 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 51 / 2e-07 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Potri.001G093700.1 pacid=42790389 polypeptide=Potri.001G093700.1.p locus=Potri.001G093700 ID=Potri.001G093700.1.v4.1 annot-version=v4.1 ATGGCTGATACTGCTGTAGCCCCAACAGTTCCAAAGAAATCAAGAAACAACAGGAAAGCTTTGAAACAAAAGAACCCATCAACAAATGAAGCCAATATAA TGGCTCAAAAGCTCCCCGAGCCATCTCCAGCCAGCGTTTTGCCCCCATCAGATACTGACTCTTCAAAAGAAAACCTTGAGAGTCTTTCTCAACCTCGGTC TTCACCCAAGAAAGGGAAGTCCAAGGCCGCGAAAGCGAAGCAGAACAAAGAGGCTGCGGCTTCTTCTTTTGAGAAGGATTTTCAAGAAATGCAAGAAATG TTGCAGCAGTTGAAGCTTGAGAAAGAGAAGACTGAGGTGTTGTTGAAGGAGAAAGATGAGATGTTGAAGGCTAAAGATGAGGAGATTGAAATGAAGGGTA AAGAACAGGAGAAAATGAAGACGGAGTTGAAGAAGTTGCAGAAGTTGAAGGAGTTTAAGCCTATCATGACTCTCCCATTCGTTCAAGTATTGAATGAAAA GGAGCAAGACAAGAAGAAAAAGAAGGGTGGCAATGAAATCAAAAGGCCATGCCCACCTTACTCCCTCTGGTGCAAAGATCAATGGAATGAGGTCAAGAAA GAAAACCCAGATGCAGAGTTCAAAGATATCTCTCACATTTTGGGGGCAAAGTGGAAGACCATTACTGCAGAGGAGAAGAAACCTTATGAGGAGAAGTATC AGGTTGAAAAAGAAGCCTATCTGAAGTTGATGACAAAGGAGAAGCGCGAGAGTGAAGCAATGAAGCTTTTGGAAGAGGAACAGAAGCAGAAGACTGCTAT GGAATTGCTTGAACAATACCTCCAGTTCAAGCAGGAAGCAGGTCAGGAAGAGAACAAGAAGAACAAGACCAAGAAAGAAAAGGATCCATTGAAACCAAAG CATCCATTGTCTGCATTTTTCTTGTTTTCTAATGAAAGAAGAGCTGCTCTGCTTGCAGAGAACAAGAATGTTCTGGAGGTGGCAAAGATTGCTGGTGAAG AATGGAAGAACATGACAGAAAAGCAAAAGAGGCCTTACGAAGAGATTGCAAAGAAGAACAAGGAAAAGTACACGCAAGAAATGGAGGCTTACAAGCAGAA CAAGGATGAAGAAGCTATGAATCTCAAGAAAGAAGGGGAAGAACTGATGAAACTTCAGAAACAGGAAGCATTGCAGTTGCTAAAGAAGAAAGAGAAAACT GAAAACATTATCAAGAAAACCAAAGAGCAACGCCAGAAGAAGCAGCAGCAGAATGCTGATCCCAACAAGCCTAAGAAGCCTGCATCTTCATTCCTTCTGT TCAGCAAAGAAACAAGGAAAAGTTTAGTGCATGAGCACCCTGGAATTAACAGTTCCACTCTAACTGCAATGATTTCTGTGAAATGGAAGGAACTTATTCA AGAAGAGAAGCAAATCTGGAACTGCAAGGCTGCTGAAGCCATGGAAGCATACAAGAAGGAATTGGAGGAGTACCACAAATCTGTTGCTGCAACTTAG
AA sequence Show only first row Show all	>Potri.001G093700.1 pacid=42790389 polypeptide=Potri.001G093700.1.p locus=Potri.001G093700 ID=Potri.001G093700.1.v4.1 annot-version=v4.1 MADTAVAPTVPKKSRNNRKALKQKNPSTNEANIMAQKLPEPSPASVLPPSDTDSSKENLESLSQPRSSPKKGKSKAAKAKQNKEAAASSFEKDFQEMQEM LQQLKLEKEKTEVLLKEKDEMLKAKDEEIEMKGKEQEKMKTELKKLQKLKEFKPIMTLPFVQVLNEKEQDKKKKKGGNEIKRPCPPYSLWCKDQWNEVKK ENPDAEFKDISHILGAKWKTITAEEKKPYEEKYQVEKEAYLKLMTKEKRESEAMKLLEEEQKQKTAMELLEQYLQFKQEAGQEENKKNKTKKEKDPLKPK HPLSAFFLFSNERRAALLAENKNVLEVAKIAGEEWKNMTEKQKRPYEEIAKKNKEKYTQEMEAYKQNKDEEAMNLKKEGEELMKLQKQEALQLLKKKEKT ENIIKKTKEQRQKKQQQNADPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAMISVKWKELIQEEKQIWNCKAAEAMEAYKKELEEYHKSVAAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	0	1
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	2.82	0.9589	TOP2.2
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	3.00	0.9635
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	4.00	0.9533
AT5G37010			unknown protein		Potri.012G145200 [exp]	6.70	0.9574
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	7.48	0.9449
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	8.30	0.9290
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.003G138000 [exp]	11.66	0.9220
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	11.74	0.9480	TOP2.3
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.001G415800 [exp]	12.00	0.9422
AT4G17000			unknown protein		Potri.009G081900 [exp]	14.66	0.9487

Compare expression of checked genes

Potri.001G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.