Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11090 516 / 0 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 498 / 3e-175 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 427 / 3e-147 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 423 / 1e-145 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT5G15890 309 / 7e-100 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT1G70230 296 / 1e-96 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G15900 285 / 5e-92 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT3G28150 278 / 3e-89 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G51640 239 / 2e-73 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 234 / 4e-71 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137800 [exp] 808 / 0 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.014G095800 [exp] 543 / 0 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 541 / 0 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 331 / 2e-109 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.010G095700 [exp] 303 / 9e-99 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.004G105500 [exp] 302 / 2e-98 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.008G146100 [exp] 301 / 5e-98 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.017G073700 [exp] 298 / 6e-97 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.017G110200 [exp] 296 / 3e-96 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033950 [exp] 602 / 0 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10032367 [exp] 575 / 0 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10029454 [exp] 468 / 2e-163 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 456 / 1e-159 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10034087 [exp] 324 / 8e-107 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 320 / 2e-105 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10010704 [exp] 290 / 2e-93 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10024167 [exp] 288 / 3e-93 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029188 [exp] 287 / 2e-92 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10039438 [exp] 264 / 1e-83 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Representative CDS sequence Show only first row Show all	>Potri.001G093800.1 pacid=42792808 polypeptide=Potri.001G093800.1.p locus=Potri.001G093800 ID=Potri.001G093800.1.v4.1 annot-version=v4.1 ATGAAGTTAATTTGGAGGCTAAATTCTCTTAATAAGTACAACAATTGGATATTTAAGCTAGCAATTGCAGTTCTCTTGTTGGGTTTTGCTTTTAGATTCT TTTTCTATCAATCTTCAAGTTTTGAACCAAATATAGAAACCCCGTTTGTTGATAGCACTGAATTGTCGAAGGAACCTGTTCCTTCTGTTGAGATTCCAAA ACCACCACCACCTGTTACTGTTGATATTCCAAAGCCACCTGCTTCCGTGAATACTTCAGAGACTTCTCTATCTTCCGGTGTACAAGAACACGAAGACGAG ACACCTCAAGAAGAACTTAATGATGGAAAGTGTGATCTTTTCACTGGGGATTGGATTCCCAATTCATCCGGACCAATCTACACAAATGCCACTTGCTCCT TGATTGAAGGTCATCAGAATTGTATGAGGAATGGACGACCAGATTCAGGCTATCTATTCTGGAGGTGGAATCCGCGAGACTGTGAGTTACCTCCATTTGA TGCTCAAATGTTTCTTGAGGTGATGAGGAATAAAAGATGGGCATTGATTGGTGATTCAATATCCCGCAACCATGTGCAGTCGTTGCTATGCATTCTCTCA ACAGTTGAACAAGCAGTTGAAGTTTACCACGATGAGGAGTACAAATCCAAAAGATGGCACTTTCCTTCCCACAACTTTACCATGTCAAACATCTGGTCTC CTTTCCTTGTAAAAGCTGCCATCTTTGAAGATAATAATGGTGTTTCATCATCTGAAGTTCAGTTGCAGCTTGACAAACTTGATACGAACTGGACAAATCT CTACCAGAGCTTTGACTACATGATAATCTCTACTGGAAAATGGTTCCTCAAAGCTGCTATCTACCATGAGAATGACACAGAGGTGGGCTGTCATATATGT CCTGGAAAGAACCTGACAGAGAAGGGATTTGTCTTTGCTTATGAGAAAGCCCTGAGATATGCAATGAACTTCATTGCAACATCCAAACACAAGGGATTGA TCTTTTTCAGGACATCCACACCAGATCATTTTGAGAATGGAGAATGGCACAATGGAGGGAATTGTACGAAAACAACACCAGCTAAAGAAGGTGAGATTGA ATTGAAGGACTTGAACAAGATTCTGCGTGCTGTTGAATTAGCTGAGTTTGAGAAGGCATCTGTGAAAGCTGCTGAAAATGGGGTAAATCTTAAACTCCTC GATTTCACGAATCTTTTGTTATCAAGACCTGATGGCCATCCGGGTCCGTACAGGCAGTTTCATCCATTTGCGCAGGACAAAAATGCGAAAGTTCAGAATG ATTGTTTACATTGGTGTTTACCTGGGCCTATTGACTACTGGAATGATGTGATAATGGAGATGGCTGTAAATGGTTGA
AA sequence Show only first row Show all	>Potri.001G093800.1 pacid=42792808 polypeptide=Potri.001G093800.1.p locus=Potri.001G093800 ID=Potri.001G093800.1.v4.1 annot-version=v4.1 MKLIWRLNSLNKYNNWIFKLAIAVLLLGFAFRFFFYQSSSFEPNIETPFVDSTELSKEPVPSVEIPKPPPPVTVDIPKPPASVNTSETSLSSGVQEHEDE TPQEELNDGKCDLFTGDWIPNSSGPIYTNATCSLIEGHQNCMRNGRPDSGYLFWRWNPRDCELPPFDAQMFLEVMRNKRWALIGDSISRNHVQSLLCILS TVEQAVEVYHDEEYKSKRWHFPSHNFTMSNIWSPFLVKAAIFEDNNGVSSSEVQLQLDKLDTNWTNLYQSFDYMIISTGKWFLKAAIYHENDTEVGCHIC PGKNLTEKGFVFAYEKALRYAMNFIATSKHKGLIFFRTSTPDHFENGEWHNGGNCTKTTPAKEGEIELKDLNKILRAVELAEFEKASVKAAENGVNLKLL DFTNLLLSRPDGHPGPYRQFHPFAQDKNAKVQNDCLHWCLPGPIDYWNDVIMEMAVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.001G093800 [exp]	0	1
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.012G036600 [exp]	9.00	0.6958
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	9.00	0.7241
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	10.39	0.7100
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009800 [exp]	13.56	0.7212
AT1G76440			HSP20-like chaperones superfam...		Potri.001G243100 [exp]	14.83	0.6903
AT4G32750			unknown protein		Potri.006G241200 [exp]	18.70	0.7002
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110100 [exp]	19.89	0.7031
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Potri.015G095100 [exp]	21.02	0.6629
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	25.45	0.6991
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.019G035100 [exp]	26.83	0.6689

Compare expression of checked genes

Potri.001G093800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.