Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41790 407 / 7e-121 CIP1 COP1-interactive protein 1 (.1) AT1G64330 134 / 2e-32 myosin heavy chain-related (.1) AT5G41780 95 / 6e-20 myosin heavy chain-related (.1) AT1G64320 81 / 2e-15 myosin heavy chain-related (.1) AT1G03080 44 / 0.0006 kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137400 [exp] 1420 / 0 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.003G137300 [exp] 325 / 1e-96 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.001G094332 [exp] 86 / 3e-19 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.001G094266 [exp] 77 / 5e-16 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) Potri.005G213400 [exp] 44 / 0.001 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 44 / 0.001 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032362 [exp] 447 / 2e-143 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10033945 [exp] 444 / 1e-135 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032361 [exp] 343 / 3e-105 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1) Lus10033944 [exp] 122 / 3e-28 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 114 / 7e-26 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10034251 [exp] 44 / 0.0008 AT5G05180 149 / 4e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G094200.5 pacid=42790545 polypeptide=Potri.001G094200.5.p locus=Potri.001G094200 ID=Potri.001G094200.5.v4.1 annot-version=v4.1 ATGACAAAGAAGAAGCACCATTTCCAAGAGTCATTAAAATCCCTCTTTGGAAGTCACATTGATCCGGAGAAAGATGAACAGCTAAAAGAAACTAAAACAG AAATTGATGACAAGGTGAAAAGGATCTTGAAGCTTATCAAGGAGGAAGATCTTGAAGAACAAGAAGGTCTCTCAGAAGAAAACTCCAAAAAAGAGCCTCT TATCGAGTTAATTGAGGATTTACAGAAAGAGTACCATTCACTCTATGGACAATATGATCATCTGAAAGGAGAGCTGAGAAAGAAAGTTCATGGCAAACAT GGAAAAGATACCTCTTCTTCATCCAGCTCAGACTCAGAATCTGATGATTCTTCTAAGCACAAAGGCAGTAAAAATGGTCGTTTGGAAAGCGAATACCAAA AGATAATAGATGGCATGAAGCAAAAACTTGAAGCTGCGAATCTAGAACTTGCTGAACTGAAGAGTAAGTTGACAGCTACAGGTGAAGAAAAGGATGCTTT GAAGTTGGAACATGAAACAGGTTTGATCAAGATACAAGAAGAAGAGGAGATCATCAGAAATTTGAAGCTTGAAGTTGAAAGATCAGACACTGATAAAGCA CAACTCTTGGTTGAGAATGGAGAACTGAAGCAAAAACTAGATGCAGGTGGCATGATAGAAGCTGAACTGAATCAAAGATTGGAAGAACTGAACAAAGTGA AAGATACACTGATTTTGGAGAAAGAGGCTGCCACGAGAAGCATTGAAGAGAGTGAGAAGATTGCAGAAGCTTTGAAGTTGGAATATGAAACAGCTTTGAT CAAGAAACAAGAAGCAGAGGAGATCATCAGAAATTTGAAGCTTGAAGTTGAAAGGTCAGACGCTGATAAGGCACAACTGTTGATTGAGAATGGAGAACTG AAGCAAAAACTAGATACTGCTGGCATGATAGAAGCTGAACTGTATAAAAAATTGGAAGAACTGAACAAAGAAAAAGATAGCTTGATTTTGGAGAAAGAGG CTGCCATGCAAAGCAATGAAGAGAGTGAGAAGATCACAGAAGACTTAAGAACCTTGACTGATTGGCTGCAGGAGGAAAAATCTGCCACAGGGCAAGAACT AGAAGCTCTTAAAGCAGAACTTTCAATCACAAAGCAGCAGCTGGAATCTGCAGAACAGCAAGTTGCAGATTTTATCCATAATCTGAAAGTAACCAAGGAA GAGAATGACTCTCTTACCTTGAAATTATCTGAAATCTCAAATGATATGGTGCAGGCACAAAATACAATTGATGGACTCAAAGGTGAATCGGGTCAATTAA AGGAGAAATTGGATAACAGGGAAAGGGAGTATTTGTCTCTTGCAGAGATGCACGAGATGCATGGAAATAAATCATCAGATCGGATAAAGGAATTGGAAGT ACAAGTAAGAGGTCTGGAACTAGAGCTGAAATCATCACAAGCCCAGAATAGAGATCTTGAGGTGCAGATTGAGAGCAAAATGGCTGAAGCAAAGCAACTG CGAGAACATAATCATGGATTAGAAGCCCGGATTTTGGAACTTGAAATGATGTCAAAAGAGAGAGGAGATGAACTTTCTGCTCTCACAAAGAAACTTGAGG AAAATCAGAACGAATCATCTAGAACAGAGATTTTGACAGTGCAGGTCAATACTATGCTAGCAGACTTGGAATCTATACGTGCCCAGAAAGAAGAATTGGA GGAACAGATGGTAATTAGAGGTAATGAAACATCGATTCATGTTGAGGGGCTTATGGATCAGGTCAACGTGTTAGAACAGCAACTGGAGTTCCTAAACAGC CAGAAAGCTGAACTGGGAGTGCAACTCGAGAAAAAAACTCTGGAAATTTCAGAATATCTTATTCAAATAGAAAATCTGAAAGAGGAGATAGTGAGCAAGA CTGCAGATCAGCAGAGATTCCTGGCAGAAAAAGAAAGTAGTACAGCACAAATCAATGATCTGGAACTAGAGGTGGAGGCTCTATGCAACCAAAACACTGA GCTTGGTGAGCAAATAAGTACTGAAATCAAGGAGAGGGAACTATTGGGAGAGGAAATGGTTCGGTTACAGGAAAAGATCCTTGAACTGGAAAAGACACGG GCAGAGAGAGATCTCGAGTTCTCTTCTCTCCAGGAGAGACAAACAACTGGAGAGAATGAAGCTTCTGCTCAGATAATGGCTTTAACAGAACAGGTCAGCA ATCTGCAACAGGGATTGGATTCTTTGCGGACTGAGAAAAACCAAACGCAATCACAGTTTGAGAAAGAGAGAGAAGAATTTTCAGAAAAGCTAACCGAATT GGAAAATCAGAAATCCGAGTTCATGAGCCAGATTGCAGAGCAGCAGAGAATGCTGGATGAACAGGAGGAGGCACGCAAAAAGCTAAATGAGGAGCATAAG CAAGTTGAAGGTTGGTTTCAGGAGTGCAAGGTGAGTCTTGAAGTAGCAGAAAGGAAAATTGAAGACATGGCAGAAGAATTCCTAAAGAATGCGGGTTCTA AAGATCAGATGGTAGAGCAATTGGAAGAAATGATCGAGGACCTGAAGCGAGATCTCGAAGTAAAAGGAGATGAAATTAACACCTTGGTTGAGAACGTCCG AAATATAGAAGTTAAGCTCCGGCTGTCAAACCAGAAGCTCCGCATCACAGAACAATTACTAACAGAGAATGAGGAGAGCCTTAGAAAAGCAGAAGAGAGG TATCAACAAGAGAAGAGAGTGCTCAAAGAAAGGGCTGCTATATTGTCTGGGATAATCACTGCAAATAACGAAGCTTATCACAGGATGGTTGCAGATATCT CGCAAAAAGTAAACAGTTCTTTGTTAGGACTGGATGCTTTAAACATGAAATTCGAAGAAGATTGTAACAGGTATGAGAACTGTATTTTGGTAGTGTCAAA GGAGATCCGGATTGCAAAGAATTGGTTCATGGAGACAAATAATGAAAAGGAAAAATTGAGAAAGGAAGTGGGTGATTTAGTTGTGCAGCTACAAGATACA AAAGAACGTGAATCGGCATTAAAGGAGAAGGTTGAGCAATTAGAGGTCAAGGTGAGGATGGAAGGGGCGGAGAAGGAGAATTTGACCAAAGCTGTAAACC ACCTGGAGAAAAAGGCGGTAGCGCTGGAGAACATGTTGAAAGAGAAGGATGAGGGGATATCAGACCTCGGAGAAGAGAAGAGGGAAGCCATAAGGCAGCT ATGCTTATGGATTGAATATCACCGAAGTCGCCATGATTATCTCAGGGAAATGCTCTCAAAGATGCCCATCAGAAGCCAGAGGGCATCTTAG
AA sequence Show only first row Show all	>Potri.001G094200.5 pacid=42790545 polypeptide=Potri.001G094200.5.p locus=Potri.001G094200 ID=Potri.001G094200.5.v4.1 annot-version=v4.1 MTKKKHHFQESLKSLFGSHIDPEKDEQLKETKTEIDDKVKRILKLIKEEDLEEQEGLSEENSKKEPLIELIEDLQKEYHSLYGQYDHLKGELRKKVHGKH GKDTSSSSSSDSESDDSSKHKGSKNGRLESEYQKIIDGMKQKLEAANLELAELKSKLTATGEEKDALKLEHETGLIKIQEEEEIIRNLKLEVERSDTDKA QLLVENGELKQKLDAGGMIEAELNQRLEELNKVKDTLILEKEAATRSIEESEKIAEALKLEYETALIKKQEAEEIIRNLKLEVERSDADKAQLLIENGEL KQKLDTAGMIEAELYKKLEELNKEKDSLILEKEAAMQSNEESEKITEDLRTLTDWLQEEKSATGQELEALKAELSITKQQLESAEQQVADFIHNLKVTKE ENDSLTLKLSEISNDMVQAQNTIDGLKGESGQLKEKLDNREREYLSLAEMHEMHGNKSSDRIKELEVQVRGLELELKSSQAQNRDLEVQIESKMAEAKQL REHNHGLEARILELEMMSKERGDELSALTKKLEENQNESSRTEILTVQVNTMLADLESIRAQKEELEEQMVIRGNETSIHVEGLMDQVNVLEQQLEFLNS QKAELGVQLEKKTLEISEYLIQIENLKEEIVSKTADQQRFLAEKESSTAQINDLELEVEALCNQNTELGEQISTEIKERELLGEEMVRLQEKILELEKTR AERDLEFSSLQERQTTGENEASAQIMALTEQVSNLQQGLDSLRTEKNQTQSQFEKEREEFSEKLTELENQKSEFMSQIAEQQRMLDEQEEARKKLNEEHK QVEGWFQECKVSLEVAERKIEDMAEEFLKNAGSKDQMVEQLEEMIEDLKRDLEVKGDEINTLVENVRNIEVKLRLSNQKLRITEQLLTENEESLRKAEER YQQEKRVLKERAAILSGIITANNEAYHRMVADISQKVNSSLLGLDALNMKFEEDCNRYENCILVVSKEIRIAKNWFMETNNEKEKLRKEVGDLVVQLQDT KERESALKEKVEQLEVKVRMEGAEKENLTKAVNHLEKKAVALENMLKEKDEGISDLGEEKREAIRQLCLWIEYHRSRHDYLREMLSKMPIRSQRAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Potri.001G094200 [exp]	0	1	Pt-CIP1.1
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	2.00	0.9041	GTC903
AT3G04980			DNAJ heat shock N-terminal dom...		Potri.013G029500 [exp]	4.00	0.8944
AT1G36990			unknown protein		Potri.002G089100 [exp]	9.79	0.8614
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	10.95	0.8752
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	12.24	0.8638
AT5G20610			unknown protein		Potri.006G145500 [exp]	12.48	0.8558
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	14.07	0.8780
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	17.02	0.8655
					Potri.013G078001 [exp]	18.22	0.8103
AT2G31600			unknown protein		Potri.017G035200 [exp]	23.64	0.8553

Compare expression of checked genes

Potri.001G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.