Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64320 65 / 1e-12 myosin heavy chain-related (.1) AT5G41780 60 / 3e-11 myosin heavy chain-related (.1) AT5G41790 56 / 8e-10 CIP1 COP1-interactive protein 1 (.1) AT1G64330 50 / 2e-07 myosin heavy chain-related (.1) AT5G58320 40 / 0.0003 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT3G10880 39 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137400 [exp] 78 / 3e-17 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 71 / 7e-15 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.019G061600 [exp] 47 / 2e-06 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.013G158100 [exp] 43 / 4e-05 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 40 / 0.0002 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G137300 [exp] 0 / 1 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033944 [exp] 73 / 1e-15 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 70 / 1e-14 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10032362 [exp] 59 / 1e-10 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10033945 [exp] 58 / 2e-10 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10030507 [exp] 50 / 1e-07 AT5G05180 120 / 3e-30 unknown protein Lus10012861 [exp] 49 / 3e-07 AT5G05180 124 / 2e-31 unknown protein Lus10034251 [exp] 44 / 2e-05 AT5G05180 149 / 4e-40 unknown protein Lus10029012 [exp] 41 / 0.0002 AT5G05180 146 / 5e-39 unknown protein Lus10034448 [exp] 40 / 0.0004 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10019111 [exp] 39 / 0.0008 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G094266.1 pacid=42789134 polypeptide=Potri.001G094266.1.p locus=Potri.001G094266 ID=Potri.001G094266.1.v4.1 annot-version=v4.1 ATGCATTTTCAGGAGCAGAAGCAGTGCTCAAGAAACCCAACGAGGACAATGAAAATCTCTCGGACCCCATTAGCCGAATCTCAAACGAGCTTCAGTTTGC GAAGAACTGTAACAAAAGATGACATAAAAAAGCTGAAACATAATGTGGATGGTTTGAAGCTCCAGCTCAAGGGCAAGGAAGAGAAGGAGCTTCTGTTAGG AGAAGAGGTGGGGAAACTAAAAGCAAAGCTGTGCAAGGAAGGGGGAGACAAGCTGAATTCTGTTAGCCAGCTTGAGATAAAGGTGGTATATTTAGAGCAG CAGGTAAAAGATAAGGAAGAGGTTTTGCTAGGTCTCAGTGAGGAAAGGAGGGAGGCCATAAGGCAGCTATGCATCTTGATTGATTATCATCGCGGCCGCT ATGATCATCTCAGAGAAGCAATATCAAAGAAGACTGTTCATATCAAGAGAATGGCTTAG
AA sequence Show only first row Show all	>Potri.001G094266.1 pacid=42789134 polypeptide=Potri.001G094266.1.p locus=Potri.001G094266 ID=Potri.001G094266.1.v4.1 annot-version=v4.1 MHFQEQKQCSRNPTRTMKISRTPLAESQTSFSLRRTVTKDDIKKLKHNVDGLKLQLKGKEEKELLLGEEVGKLKAKLCKEGGDKLNSVSQLEIKVVYLEQ QVKDKEEVLLGLSEERREAIRQLCILIDYHRGRYDHLREAISKKTVHIKRMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094266 [exp]	0	1
AT5G24630		MID, BIN4	MIDGET, brassinosteroid-insens...		Potri.015G000701 [exp]	1.41	0.8655
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	1.73	0.8320
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	5.65	0.8168	Pt-MRP5.2
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	5.91	0.8166
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242200 [exp]	9.53	0.7983
AT5G39590			TLD-domain containing nucleola...		Potri.002G024966 [exp]	10.09	0.8024
AT1G27461			unknown protein		Potri.014G015300 [exp]	13.22	0.7359
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	13.26	0.7678
AT4G21520			Transducin/WD40 repeat-like su...		Potri.004G034600 [exp]	16.43	0.7792
					Potri.009G042350 [exp]	18.33	0.7082

Compare expression of checked genes

Potri.001G094266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.