Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64320 62 / 5e-12 myosin heavy chain-related (.1) AT5G41790 54 / 4e-09 CIP1 COP1-interactive protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137300 [exp] 173 / 4e-51 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.003G137400 [exp] 73 / 1e-15 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 68 / 7e-14 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033944 [exp] 50 / 2e-07 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 49 / 3e-07 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10033945 [exp] 46 / 4e-06 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032361 [exp] 44 / 1e-05 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G094332.1 pacid=42792030 polypeptide=Potri.001G094332.1.p locus=Potri.001G094332 ID=Potri.001G094332.1.v4.1 annot-version=v4.1 ATGAAGGAGCTGGAGGAACAGTTAGCTACACTTAAGACTGAGATGGATTCCTTGTACAACCTGAAAAAAGGCCTTGAGGTACAGATTGAAAACAAAGCAG CTAAAGCTAAACAGCTTCAAGAGAAAAAATCACAGCTGCTTTCATGGGTTTCGGAACTTGAACTGATGTCAAAAGAGAAAGGAGACGAGATATCTACAAT CCAGAAGAAAATGAAGGATAATGAGATGAACTTCACATCTAGAATTGAAGATTTAATGACACAGGTCAAGATTCTGCAACTGGAGACGGTTTCTTTACAT TCTCAGAATGGTAAACTGAAAGCAGGTAAGCAGAAGGAAGCATCAGCTCAAGCCAAGGGCTTCAAGAACCAAATTAACGTTTTGCAAAAGGAATTGGAAT CCCTTCACAGTGAGAAATCTCATCTGAAATGA
AA sequence Show only first row Show all	>Potri.001G094332.1 pacid=42792030 polypeptide=Potri.001G094332.1.p locus=Potri.001G094332 ID=Potri.001G094332.1.v4.1 annot-version=v4.1 MKELEEQLATLKTEMDSLYNLKKGLEVQIENKAAKAKQLQEKKSQLLSWVSELELMSKEKGDEISTIQKKMKDNEMNFTSRIEDLMTQVKILQLETVSLH SQNGKLKAGKQKEASAQAKGFKNQINVLQKELESLHSEKSHLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094332 [exp]	0	1
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	3.74	0.8478
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.002G239100 [exp]	5.29	0.8170
AT5G17910			unknown protein		Potri.019G044500 [exp]	6.92	0.8597
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	7.93	0.8332
AT1G27461			unknown protein		Potri.014G015300 [exp]	16.37	0.7401
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	16.52	0.7964
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	20.78	0.8096
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.005G029000 [exp]	23.87	0.7987
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094266 [exp]	25.07	0.7664
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016300 [exp]	29.93	0.7498

Compare expression of checked genes

Potri.001G094332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.