Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41770 1117 / 0 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 1027 / 0 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 906 / 0 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 599 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G03430 79 / 1e-14 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT5G28740 78 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17760 76 / 7e-14 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G17040 68 / 1e-11 HCF107 high chlorophyll fluorescent 107 (.1.2) AT4G24270 56 / 1e-07 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT3G11964 53 / 8e-07 RNA binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137200 [exp] 1307 / 0 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.013G135300 [exp] 86 / 4e-17 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.004G035600 [exp] 76 / 5e-14 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G145000 [exp] 72 / 9e-13 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2) Potri.016G062600 [exp] 54 / 6e-07 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1) Potri.003G106200 [exp] 51 / 3e-06 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G229732 [exp] 45 / 0.0003 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041477 [exp] 1179 / 0 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 1176 / 0 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10016906 [exp] 88 / 2e-17 AT3G17040 761 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10018580 [exp] 85 / 1e-16 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10039811 [exp] 76 / 8e-14 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10022346 [exp] 71 / 1e-12 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 68 / 2e-11 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037766 [exp] 65 / 2e-10 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10003684 [exp] 56 / 1e-07 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016216 [exp] 54 / 3e-07 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02184 [poplar] [flax] HAT HAT (Half-A-TPR) repeat
Representative CDS sequence Show only first row Show all	>Potri.001G094400.1 pacid=42793182 polypeptide=Potri.001G094400.1.p locus=Potri.001G094400 ID=Potri.001G094400.1.v4.1 annot-version=v4.1 ATGGCTTCCAATAGGGACGGAGATCCTTCTCTCGGCTACCTAACCCGAAAAGACACTGAGGTAAAGCTCCCCCGCCCGACCCGAGTGAAGAACAAAACCC CCGCCCCGATCCAAATCACAGCGGAGCAAATCCTCCGCGAAGCACGAGAACGACAAGAAGCTGAAATTCGACCGCCCAAACAGAAAATCACAGACTCGAC TGAACTGGCCGACTACCGTCTCCGCAAGAGGAAAGAATTCGAGGATTTAATTAGACGAGTGAGGTGGAACATCAGTGTTTGGATCAAGTACGCGCAGTGG GAAGAGTCGCAGAAGGATTTCAATCGCGCGCGTTCAGTTTGGGAGCGTGCACTCGAGGTGGATTACCGGAATCATACTCTATGGCTAAAATACGCGGAAG TGGAGATGAAAAACAAGTTTATAAATCATGCCAGAAATGTGTGGGACCGGGCGGTCACTCTTCTCCCCAGGATTGATCAGCTCTGGTATAAGTATATTCA TATGGAGGAGATGTTGGGGAATGTTGCTGGAGCGAGGCAGATTTTCGAGAGATGGATGGGGTGGATGCCGGACCAGCAAGGTTGGCTTTCCTATATAAAG TTTGAATTGAGGTATAATGAGGTGGAACGTGCACGGGGGATTTTTGAGAGGTTTGTTCAGTGTCATCCCAAGGTGAGTGCGTGGATTAGGTATGCCAAGT TTGAGATGAAGAATGGGGAGGTTGCGAGGGCAAGGAATGTATATGAAAGGGCGGTTGAGAAGTTGGCTGATGATGAGGAGGCAGAGATGTTGTTTGTTGC GTTTGCAGAGTTTGAAGAGAGGTGCAAAGAAACGGAGAGGGCGAGGTGCATTTATAAATTTGCATTGGATCATATACCGAAAGGGAGGGCAGAGGATTTG TATAGGAAGTTTGTCGCATTTGAGAAACAGTATGGTGATAAAGAAGGGATTGAGGATGCGATTGTGGGCAAGAGGAGGTTTCAGTATGAAGATGAAGTGA GGAAGAATCCTTTGAATTATGATGCGTGGTTTGATTATATTAGGTTGGAGGAGAGTGTGGGGAATAAGGAGAGGATTAGAGAGGTGTATGAACGTGCAAT TGCTAATGTCCCTCCTGCCCAAGAGAAGAGATACTGGCAGAGATATATTTATCTGTGGATAAATTATGCCCTTTATGAAGAGCTCGATGCAGAAGATATA GAACAAACACGTGAGGTATATAGGGAATGCTTGAATCTGATCCCACATGAGATATTTTCATTTGCAAAAATTTGGCTTTTAGCAGCCCAATTTGAGATCC GACAATTGAATCTGAAGGGAGCTCGACAAGTTTTAGGTAACGCCATTGGAAAAGCTCCTAAGGATAAGATATTTAAGAAATATATTGAGATTGAGCTGCA GCTTGGAAATATCGATCGTTGCCGAAAACTCTATGAGAAATATTTAGAGTGGTCGCCCGAGAATTGCTATGCTTGGAGCAAATATGCTGAGCTGGAGAGA TCCTTGAGTGAAACTGAACGGGCCCGATCTATTTTTGAGCTTGCTATAGCACAGCCAGCCTTGGATATGCCAGAGTTGTTGTGGAAGGCATACATTGATT TTGAAATCTCTGAGGGCGAATACGATAGAACTCGGGAACTTTACAAGAGACTTTTGGATCGCACAAAGCATCTAAAAGTTTGGATCAGCTGTGCTAAATT CGAGGCATCTGCCATGGAAGAACAGAAGCTGTGTGTTCAAAATGCAAGAAGGGTTTTTGAGAAAGCATTAAACTACTTTAGAATGTCCGCCCCTGAACTG AAAGAAGAAAGAGCTATGCTCTTAGATGAATGGTTGGACATGGAGAAAAGTTTTGGGCAGCTAGGTGATGTTAGCCTTGTTGAGCCTAAACTGCCTAAGA AACTGAAAAAGAGAAAGCAGATTGCTTCTGAAGATGGCCTGGCTGGGTACGAGGAATACATAGATTACGTATTTCCAGAAGAAGCTCATGCACATAATCT CAAAATCTTGGAAAAAGCACGTGAATGGAAGAGGCAAAAGCTTGCATCCGGTGCTGAGGACTAG
AA sequence Show only first row Show all	>Potri.001G094400.1 pacid=42793182 polypeptide=Potri.001G094400.1.p locus=Potri.001G094400 ID=Potri.001G094400.1.v4.1 annot-version=v4.1 MASNRDGDPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNISVWIKYAQW EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRIDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYIK FELRYNEVERARGIFERFVQCHPKVSAWIRYAKFEMKNGEVARARNVYERAVEKLADDEEAEMLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL YRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKNPLNYDAWFDYIRLEESVGNKERIREVYERAIANVPPAQEKRYWQRYIYLWINYALYEELDAEDI EQTREVYRECLNLIPHEIFSFAKIWLLAAQFEIRQLNLKGARQVLGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELER SLSETERARSIFELAIAQPALDMPELLWKAYIDFEISEGEYDRTRELYKRLLDRTKHLKVWISCAKFEASAMEEQKLCVQNARRVFEKALNYFRMSAPEL KEERAMLLDEWLDMEKSFGQLGDVSLVEPKLPKKLKKRKQIASEDGLAGYEEYIDYVFPEEAHAHNLKILEKAREWKRQKLASGAED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	0	1
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	3.46	0.8260
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	4.47	0.8527
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.005G191700 [exp]	5.91	0.7576
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	8.24	0.8359
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	9.79	0.8243
AT3G58110			unknown protein		Potri.013G119700 [exp]	10.95	0.8235
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	11.83	0.7745
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	12.00	0.8124
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	16.15	0.8094
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	17.88	0.7850

Compare expression of checked genes

Potri.001G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.