Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41760 525 / 0 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 198 / 7e-61 Nucleotide-sugar transporter family protein (.1) AT2G43240 130 / 1e-34 Nucleotide-sugar transporter family protein (.1.2) AT3G59360 129 / 3e-34 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136800 [exp] 613 / 0 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 206 / 5e-64 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.017G035800 [exp] 135 / 4e-36 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.008G077300 [exp] 134 / 5e-36 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 130 / 2e-34 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037204 [exp] 568 / 0 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10036726 [exp] 540 / 0 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026562 [exp] 208 / 3e-64 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 177 / 6e-52 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025486 [exp] 137 / 6e-37 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10027009 [exp] 139 / 3e-36 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF04142 [poplar] [flax] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Potri.001G094600.1 pacid=42788542 polypeptide=Potri.001G094600.1.p locus=Potri.001G094600 ID=Potri.001G094600.1.v4.1 annot-version=v4.1 ATGCAGTGGTACTTCGTCGCCTTACTTCTCACATTTCTCACCAGCTCTCAGGGCATTTTGACTACTCTATCTCAAAGTAATGGAAAGTATTTGTACGACT ATGCCACTGTACCCTTTCTTGCTGAAGTTTTCAAGCTGGTGCTTTCTAGTTTACTTGTTTGGAGAGAGTGCCAGATATCACCATCTACAAGGATGACTAC AGAATGGAAGAGTGTGCGCTTATACGTTGTTCCTTCAATCATTTATCTAATTCATAACAATGTTCAGTTTGCTACTTTGACTTATGTGGATGCATCCACT TACCAGATAATGGGTAATTTGAAGATTGTTACCACTGGCATATTATTCAGGCTGTTCCTGAGGAGGAGACTGTCTAATCTGCAGTGGATGGCAATTATTC TATTAGCTGTTGGAACAACCACAAGCCAGGTTAAAGGTTGTGGAGAAGCATCCTGTGATTCTCTATTTGCAGCTCCAATTCAAGGCTATATGTTGGGGGC AGTATCTGCTTGTCTATCAGCATTAGCAGGTGTCTACACAGAGTTTCTGATGAAGAAGAACAACGATAGCTTGTATTGGCAAAACGTTCAATTATATACA TTTGGCTCAATATTCAACTTGGCTCGGCTTGTCCTGGATGATTACAGGGGTGGATATGAGAACGGATCCTGGTGGCAACGCCTTTTCAATGGCTACAGTA TTACAACTTGGATGGTTGTTTTGAATCTTGGATCCACTGGCTTGTTGGTTTCATGGTTGATGAAGTATGCTGACAATATCGTGAAGGTGTATGCCACATC AATGGCAATGCTGCTAACAATGGTTTGGTCTGTGTACCTCTTTAGCTTCAAGCCTACTTTGCAGCTTTTCTTGGGTATTATCATCTGTATGATGTCACTG CACATGTATTTTGCCCCACCAAACATGCTTTTGGATTTGCCTACACAAGTCAGAGCCGCTCCCGAGAGCCTGAAAGAAGTAACGGTTGAACGAAGAACAG ATTCCTGA
AA sequence Show only first row Show all	>Potri.001G094600.1 pacid=42788542 polypeptide=Potri.001G094600.1.p locus=Potri.001G094600 ID=Potri.001G094600.1.v4.1 annot-version=v4.1 MQWYFVALLLTFLTSSQGILTTLSQSNGKYLYDYATVPFLAEVFKLVLSSLLVWRECQISPSTRMTTEWKSVRLYVVPSIIYLIHNNVQFATLTYVDAST YQIMGNLKIVTTGILFRLFLRRRLSNLQWMAIILLAVGTTTSQVKGCGEASCDSLFAAPIQGYMLGAVSACLSALAGVYTEFLMKKNNDSLYWQNVQLYT FGSIFNLARLVLDDYRGGYENGSWWQRLFNGYSITTWMVVLNLGSTGLLVSWLMKYADNIVKVYATSMAMLLTMVWSVYLFSFKPTLQLFLGIIICMMSL HMYFAPPNMLLDLPTQVRAAPESLKEVTVERRTDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	0	1
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	3.74	0.8447
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	3.74	0.8602
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	4.58	0.8571
AT5G14390			alpha/beta-Hydrolases superfam...		Potri.001G340000 [exp]	8.36	0.8505
AT2G25270			unknown protein		Potri.006G258700 [exp]	9.38	0.8583
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Potri.002G099100 [exp]	9.53	0.8321
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Potri.006G116200 [exp]	10.58	0.8531
AT4G17430			O-fucosyltransferase family pr...		Potri.003G079400 [exp]	15.49	0.7861
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	19.39	0.7579
AT5G23200			unknown protein		Potri.005G092000 [exp]	19.89	0.8207

Compare expression of checked genes

Potri.001G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.