Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11160 828 / 0 Translation initiation factor 2, small GTP-binding protein (.1) AT1G17220 306 / 7e-91 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT1G21160 76 / 6e-14 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 72 / 1e-12 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76820 71 / 2e-12 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 70 / 5e-12 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT5G39900 62 / 1e-09 Small GTP-binding protein (.1) AT2G27700 55 / 1e-07 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT5G13650 55 / 1e-07 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 43 / 0.0008 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G140100 [exp] 316 / 1e-94 AT1G17220 1160 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G436300 [exp] 307 / 3e-91 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.019G103600 [exp] 72 / 1e-12 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.012G039200 [exp] 69 / 9e-12 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.006G053000 [exp] 57 / 3e-08 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.017G079800 [exp] 53 / 5e-07 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 45 / 0.0001 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033933 [exp] 903 / 0 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10005581 [exp] 298 / 2e-88 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10013713 [exp] 295 / 6e-87 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10012856 [exp] 62 / 1e-09 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 62 / 2e-09 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 52 / 9e-08 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10015364 [exp] 54 / 3e-07 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 52 / 1e-06 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10012200 [exp] 52 / 1e-06 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007535 [exp] 52 / 2e-06 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0023 [poplar] [flax] PF11987 [poplar] [flax] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Potri.001G095500.4 pacid=42788299 polypeptide=Potri.001G095500.4.p locus=Potri.001G095500 ID=Potri.001G095500.4.v4.1 annot-version=v4.1 ATGGCTTGCAGAGCGGCTGGCAAAAGGGGTATTGATGTTGGTCTCACAAGAGTTTTGACTTCACCATCGCTAGGGCATGCTGTGGGGTTAACTTCAAGAA CTAGTCTTGATGGTGCTTCAGTCAGATATATACCTGAGTCTTCTTTCAGCTCATTTCTACAAGGGTCTGGTCATCACGCTACAAAAGAATCATCTATCAG GATTGTGTCATGGCTCTATATCTCACTTAGGTGCTTTCACGCTAGTCGAGAACTGTGGGCCAGAAGAAAAAATGATAACCAAGGAGTTGATTTGAAGACG CAAAAGAAAGGGAAGTTTGCTAAAAGGATCAAAAAACCTCCAGTTGATGCTCCATATGTGCCTCCTAAACTGAAAAGAATTACCAAGTCCTTGCAAGATA AAACAATTGACATATTTGAAGGCATGACCACTGTTGAGCTTGCCAAGCGCACTGGTCAGTCAGTTATAACTCTGCAGGAATTTCTTGTTAATCTTGGGGA AAAGGTTGTCTCAGAATTTGACCCACTCAAGATCGATGTTGCGGAGCTGGTTGTAATGGAAGTTGGGGCCAATGTCAGGAGGCAACACTCCAATGAAGGT TCAGAAATTCTTCCCCGACCAGTGGTTGTAACAGTCATGGGTCATGTTGACCATGGTAAAACTTCTCTTTTGGATGCTCTACGTCAAACATCAGTGGCAG CAAAGGAAGCTGGAGGCATAACTCAGCATCTGGGTGCTTTTGTTGTGCGCATGCCTTCAGGGGCATCAATCACATTCCTTGACACTCCTGGTCATGCTGC TTTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACCGATCTAGTTGTGCTCGTTGTTGCAGCTGATGATGGGGTGATGCCTCAAACTCTTGAAGCCATA TCTCATGCAAAATCAGCTAATGTACCAGTTGTAGTTGCAATTAATAAATGTGATAAACCGAGTGCAAACCCTGAGAGAGTCAAACTCCAGCTTGCGTCTG AAGGATTTTTGCTTGAGGAAATGGGTGGAGATATTCAGGTAGTTGAAGTTTCAGCTGTTACAAAAACTGGATTGGATAACCTGGAGGAGGCTATACTTCT TCAGGCGGAGATGATGGAATTAAAAGCACGTGTTGATGGTCATGCTCAAGCTTATGTAGTAGAGGCAAAACTTGACAAAGGACGGGGTCCTTTGGCTACT GCTATAGTGAAGGCGGGGACTTTAGTTTGTGGGCAGCACGTGGTTGTTGGCTCAGAGTGGGGAAGAATAAGGGCTATTAGGGATATGTCAGGGAAGCTGA CTGAGCGGGCAAGACCAGCAATGCCAGTTGTTATTGAAGGGCTGAAGGGGCTTCCTATGGCTGGTGATGATGTTACTGTTGTGGAAACTGAGGAGCGAGC TAGAATGCTAAGTGCAGGGAGGAGAAGGAAATATGAAAAAGACAGGCTTAGGCAGATCATGGAGCAAAGGACAGAAACTAACGAACCATCAGAAGATGAC TCTGTTGTGCCTGAGAGGACTGAAATGCCATTAATAGTAAAAGCAGATGTGCAAGGAACTGTCCAAGCTGTCACAGATGCCTTGAGGACTTTAAACAGCC CTCAGGTTTTTGTGAATGTGGTCCATGTTGGTGTTGGGCCTATTTCTCAGTCTGATGTGGACTTGGCACAAGCCTGTGGTGCATATATAGTTGGGTTCAA TGTGAAGAGTCCACCTAGTTCTATTAGCCAGGCTGCAATCCAAGCTGGTACAAAGATTATGCAACACCAAGTGATCTATCACCTTTTGGATGAAGTTGGC AATTTGATAGTAGACAAAGCCCCTGGGACACTCGAGACCCAGGTAGCTGGGGAGGCTGAAGTGCTGAACATCTTTGAGCTAAGAGGAAGGAGCAAGTCTG CAGGAGGTGATATAAAGATTGCTGGCTGCAGAGTGATGGGTGGCCATTTTAGCAAATCATCGACCATGAGGCTTCTAAGGAGTGGGGAAGAAGTGTTTGA AGGACCTTGTGCATCTCTAAAGACTAACAAGCATGATGTGGAATTGGTGGAGAAAGGAAATGAATGTGGACTTGTGATCCTTGGCTGTAATGATTTTCAG ATTGGAGACGTCATCCAGTGCTTGGAGCAAGTAGTTAGGAAGCCCAAGTTGATCATATCAGACAATGGTATTGCTCGAATTGAGTGCTATTAG
AA sequence Show only first row Show all	>Potri.001G095500.4 pacid=42788299 polypeptide=Potri.001G095500.4.p locus=Potri.001G095500 ID=Potri.001G095500.4.v4.1 annot-version=v4.1 MACRAAGKRGIDVGLTRVLTSPSLGHAVGLTSRTSLDGASVRYIPESSFSSFLQGSGHHATKESSIRIVSWLYISLRCFHASRELWARRKNDNQGVDLKT QKKGKFAKRIKKPPVDAPYVPPKLKRITKSLQDKTIDIFEGMTTVELAKRTGQSVITLQEFLVNLGEKVVSEFDPLKIDVAELVVMEVGANVRRQHSNEG SEILPRPVVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVRMPSGASITFLDTPGHAAFSAMRARGAAVTDLVVLVVAADDGVMPQTLEAI SHAKSANVPVVVAINKCDKPSANPERVKLQLASEGFLLEEMGGDIQVVEVSAVTKTGLDNLEEAILLQAEMMELKARVDGHAQAYVVEAKLDKGRGPLAT AIVKAGTLVCGQHVVVGSEWGRIRAIRDMSGKLTERARPAMPVVIEGLKGLPMAGDDVTVVETEERARMLSAGRRRKYEKDRLRQIMEQRTETNEPSEDD SVVPERTEMPLIVKADVQGTVQAVTDALRTLNSPQVFVNVVHVGVGPISQSDVDLAQACGAYIVGFNVKSPPSSISQAAIQAGTKIMQHQVIYHLLDEVG NLIVDKAPGTLETQVAGEAEVLNIFELRGRSKSAGGDIKIAGCRVMGGHFSKSSTMRLLRSGEEVFEGPCASLKTNKHDVELVEKGNECGLVILGCNDFQ IGDVIQCLEQVVRKPKLIISDNGIARIECY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	0	1
AT3G21465			unknown protein		Potri.008G205300 [exp]	3.46	0.8304
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	5.47	0.7976	Pt-PURE.2
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	5.47	0.8124	GLYRS.2
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.012G073600 [exp]	6.63	0.7591
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	8.48	0.8173
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	9.79	0.8035
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	10.09	0.7625
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	10.90	0.7842
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	13.26	0.7716
AT3G49990			unknown protein		Potri.005G234800 [exp]	21.23	0.7699

Compare expression of checked genes

Potri.001G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.