Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59140 1638 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 1083 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT1G04120 1075 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13080 1048 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G60160 1006 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13090 999 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G62700 993 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G13100 989 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT2G47800 969 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G60970 892 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135800 [exp] 1952 / 0 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.015G023800 [exp] 1875 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 1845 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 1833 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G034700 [exp] 1150 / 0 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Potri.016G122901 [exp] 1117 / 0 AT3G59140 1144 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.014G193400 [exp] 1088 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.001G362300 [exp] 1082 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.002G255800 [exp] 1077 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017548 [exp] 1877 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 1804 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 1797 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10004896 [exp] 1127 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10022858 [exp] 1093 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 994 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 991 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10011498 [exp] 970 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10024965 [exp] 962 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10023139 [exp] 898 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.001G095600.1 pacid=42790650 polypeptide=Potri.001G095600.1.p locus=Potri.001G095600 ID=Potri.001G095600.1.v4.1 annot-version=v4.1 ATGAAGGAAGGTCCCTGGACAGTCTTCTGTGATGATTCTGAAAGTTCGTGCAATGCTGCGAAGAAATGCATTTCAAGCTTAATCAGCCCATATTCATGCA GCCATCACATTTTGATCATTTCTGTTGACATTCTGCTTTTGTTGATTGTCTTATCTATCTTCATTTGTAAATCAGTCTCAAGGAAGATTGCTGCTCAATC GCAGTCTCAACCTCCCTCTCCGGTCATAAATGTCTCAGCCATTTTTAATGGCATTTTGGGTTTGGTATACTTAGGCTGGGGAATATGGATGATTTCTGAG AAACTTGGTAGAGATCAAACCATTTTACCACTTCATGGGTGGCTGGTAATACTATTCCAGGGATTCACATGGTTGCTAGTAAATTTATTGGTAAGCCTGA AAAAAGTACCGTCTCCCCAAATCGCAGCAGTGAAGTTCTGTTTAATTATCACATTTTTGTTTTCTGGATTTCTCTGTTTTTCATCAATCTGGGGAGCGAT TTCAGACAAAACTTTGTCAGTTCCGATGCTTTTGGATATCTTATCCTTTCCCGGGGCATTTCTTTTCCTCTTCTGTGGTTTCAAGCGACAAAGTTATGAA AGCACTGATTTAGACATCAGCGACGGTGCATCCTATGAACCTTTGCCAGGTGAGGAAGACAATGCCAACGGTGAAATCAGTTCAAACCACAATATCACTC CTTTTGCCAATGCCGGGTTTTTCAGTCAAATGTCATTTTGGTGGTTGAATCCATTAATGAAGAAAGGTAAGGAGAAAATCCTCGAGGATGGAGATATTCC ACAGTTAAGAGAGGCAGATCGAGCAAAGACTTGCTACTTAATGTATATGGGGCAGCTGGGAACACGAAAACAAAATGGATTGTCTGATTCCATTTCTATG CTTTCAGTAATCATTTCCTGGCACTGGAAAGAAATTTTAATTTCTGGGTTTTTTGCGCTGATCAAGGTACTATCCTTGGCTACTGGCCCGTTGTTTTTAA AAGCCTTCATTGATGTTGCAGAAGGCAAAGCAGCATTCGAATATGAGGGTTATGTGCTAACAGCAGGGCTGTTTTTAGCAAAAGTCTTAGAGTCTCTGTC AGAGAGGCATTGGCGCTTTCGAACAAGACTGATTGGGATCCAAGTGAGATCCATGTTATCTGCAGCTATCTATCAAAAGCAACTACGGCTTTCAAACGCT GCTAAAATGATTCATTCTTCTGGTGAAATAGTGAGCTATGTCACTGTAGATGCCTATCGAATTGGTGAGTTCCCATTTTGGTTTCATCAAATATGGGCAA CAAGCATTCAATTGTGTCTTGCCTTGGCTATTGTTTACTATTCCATTGGGCTGGCAACTCTTGCAGCTCTAGTGACTGTCATATTGCTTGTGCTTTCAAG TTACCCATTAATCAAATTACAGCACAAGTATCTGACAAAGCTCATGGTGGCACAAGATAGGAGACTGAAGGCCATTACAGAGGCACTTGCAAATATGAAA ATCTTGAAGTTGTATGCCTGGGAAACACATTTCAAGAATGTTGTAGATGGATTAAGGAAAGAAGAATTCCAGTGGATATCAGGAGTTCTATGGCAAAAAG GGTACCATATGGTTTTATTTTGGTCATCTCCTGTTATGGTGCCAGCCATAACTTTCTGGGCATGCTACCTTCTTGGAATTCCAGTTTCTGCCAGTAGTGT ATTCACATTTCTGGCATGTTTGCGCATTGTTCAGGAACCAATTAGGTTGATTCCAGATGTTGCAGGAGTCTTCATTGAAGCAAAGGTCTCACTAGATAGA ATTGTGAAGTTTCTTGAAGCTCCAGAATTGCGGAACAGTATTACAAGGCAAAAGCTTAATGGCAAAGAGCTTGATCAGTCTATTTTAATCAGAACCACAG AAATCTCATGGGGCATTGATTCCTCATCGAAGGCTACATTAAGAAACATAAATGTGGTGGTTAAACCAGGTGAAAAGGTTGCAATTTGTGGCGAGGTTGG CTCAGGAAAATCAACTCTTTTGGCAGCAGTTCTTGGAGAAGTTCCAAAAATTACTGGAATAGTCCATGTTTTTGGAAAGATAGCATATGTTTCTCAGACT GCATGGATTCAAACAGGGACAATACAGGAAAATATTCTGTTTGGGGCTGCAATGGAACCAATAAGATATCAAGAGGTGCTTGAGAGGTGTTCTCTAGTAA AGGACATTGAGATTTTACCATTCGGAGACCTCACTGAGATCGGAGAGAGAGGTGTCAATCTGAGTGGTGGACAGAAACAACGGGTTCAACTTGCACGTGC ACTATATCAGGACGCGGATGTATATCTCTTGGACGATCCCTTCAGTGCTGTTGATGCACATACAGCAACAATCCTTTTCAATGATTATGTGATTGGAGCT TTGTCTGGCAAGACAGTCTTACTTGTGACCCACCAAATCGACTTCCTTCCAGCTTTCAATTCTATTTTGTTGATGTCTGGTGGAGAAATCATAAGATCTG ATACTTACAGTCAGTTGATGGCTTCCAGCCAAGAATTCCAAGACCTTGTCAATGCACACAAGAACACAGCTGGTTCTGACACACAAGTTGAGTATGATTC CAGCAAAAGAGCTGAAACTTCCAAAACGGAAGAAATCCAGAAAGTTCATTCTAAAGAAAAGTTAAGAGCACCTTCAGGGGATCAACTGATTAAGCGAGAA GAAAGAGAATCTGGAGACACTGGTTTTAAGCCTTACATACAGTACTTGAGTCAGAGAAAGGGCTTCCTGTATTTTTCTTTGGCAATTATAACCCACATCA TATTCATTGTTGGTCAAGTGATACAAAGCTATTGGTTAGCTGCTAACATCCAGAATTCTCATGTAAGCAGAGTAACCATGTTCACAGTTTACTCAGTGAT CGGTTGTAGCTTGGCGGTATTTTTACTCCTTCGATCATTCTTCATAGTTCAATTAGGCTGTGGGGCTTCGGAATCTATTTTCTCCACACTATTGACTTCT CTTTTTCGAGCACCAATGTCCTTCTATGATTCAACACCTCTGGGTAGAATACTGAGTCGAGTATCATCTGATTTGAGCGTGACTGACCTTGAAGTGGCTT TCAGATTGACCATTGCAATAGGATCAACCATGAATACATACTTCAACTTTGCAGTGTTGGCTTTCCTTACCTGGCCAGTCCTTTTTGTCATCATTCCCAT GATTTATCTGAATATTGTGTTGCAGAGGTATTATTTCGCTTCTGCAAAAGAGTTGATGCGAATCAATGGCACAAGCAAGTCCTCGGTTGCAAGCCATCTT GCTGAATCAATTGCAGGAGCCATGACAATCAGAGCTTTTGGGGAGGAAGCTCGATTTTTTTCGAAGAATCTCGACCTCATCGACCGAAATGCAAGCCCAT ACTTTCACACTTTTACTGCAGATGAGTGGCTGATCCAACGGCTGGAATTACTATGTGCAATTGTTCTTTCATCGTCAACTCTTACCATGATATTGCTTCA TCTTACAGCTTCTGCATCTGGGTTTATTGGAATGGAACTGTCATATGGCCTTTCATTAAACGTATTCCTCGTCTTCTCCGCCCAATATCAATGCTCAGTA TCAAATTCAATCATTTCAGTAGAAAGACTGGAACAATACATGCATATTCCTAGTGAAGCTCCAGAAGTAATAGAGACCAACCGACCTAGCACCAACTGGC CTGCTGTTGGTAAAGTGGAAATATTCAATTTGAAGGTTAGATATCGGCCAAATGCTCCACTAGTTCTTCAGGGAATAACTTGCACAATTGAAGGAAGGCA CAAAATTGGGATAGTTGGCCGGACTGGAAGTGGAAAGACAACTTTCATAAGCGCCTTGTTCCGTTTAGTGGAGCCTACTGAGGGAAAAATAGTTATAGAT GGCCTCGACATCTCCACAATCGGGCTCCATGATCTAAGATCTCATTTTGCAGTCATCCCACAAGATCCAACACTTTTTGTCGGATCTGTCAGATACAATC TGGACCCCTTATCGAAGCATACAGATCAAGAGATATGGGAGGTTCTTGAAAAGTGTCATCTTCGAGAAGCCATTCAAGAGAAAGAAGAGGGCCTGAATTC TTTAGTTGCACAAGATGGATCAAACTGGAGCATGGGACAACGCCAACTATTTTGTTTAGGACGTGCATTGTTAAAGAGAAGCAGGATACTAGTGCTTGAC GAAGCCACTGCATCAATTGACAACGCAACAGACTCTCTTCTCCAGAAAACTATTAGAGCTGAATTTGCAGACTGCACTGTAATAACCGTGGCGCACAGGA TACCGACTGTGATGGACTGCACTATGGTTCTTGCGATCAGTGATGGGAAATTGGTAGAGTATGATGAGCCATTGAAGCTGATGAACAAGGAAGGATCACT ATTTGGGCAGCTTGTTAAAGAATACTGGTCTCGTACCGCAAACAGCCGTGACTGA
AA sequence Show only first row Show all	>Potri.001G095600.1 pacid=42790650 polypeptide=Potri.001G095600.1.p locus=Potri.001G095600 ID=Potri.001G095600.1.v4.1 annot-version=v4.1 MKEGPWTVFCDDSESSCNAAKKCISSLISPYSCSHHILIISVDILLLLIVLSIFICKSVSRKIAAQSQSQPPSPVINVSAIFNGILGLVYLGWGIWMISE KLGRDQTILPLHGWLVILFQGFTWLLVNLLVSLKKVPSPQIAAVKFCLIITFLFSGFLCFSSIWGAISDKTLSVPMLLDILSFPGAFLFLFCGFKRQSYE STDLDISDGASYEPLPGEEDNANGEISSNHNITPFANAGFFSQMSFWWLNPLMKKGKEKILEDGDIPQLREADRAKTCYLMYMGQLGTRKQNGLSDSISM LSVIISWHWKEILISGFFALIKVLSLATGPLFLKAFIDVAEGKAAFEYEGYVLTAGLFLAKVLESLSERHWRFRTRLIGIQVRSMLSAAIYQKQLRLSNA AKMIHSSGEIVSYVTVDAYRIGEFPFWFHQIWATSIQLCLALAIVYYSIGLATLAALVTVILLVLSSYPLIKLQHKYLTKLMVAQDRRLKAITEALANMK ILKLYAWETHFKNVVDGLRKEEFQWISGVLWQKGYHMVLFWSSPVMVPAITFWACYLLGIPVSASSVFTFLACLRIVQEPIRLIPDVAGVFIEAKVSLDR IVKFLEAPELRNSITRQKLNGKELDQSILIRTTEISWGIDSSSKATLRNINVVVKPGEKVAICGEVGSGKSTLLAAVLGEVPKITGIVHVFGKIAYVSQT AWIQTGTIQENILFGAAMEPIRYQEVLERCSLVKDIEILPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATILFNDYVIGA LSGKTVLLVTHQIDFLPAFNSILLMSGGEIIRSDTYSQLMASSQEFQDLVNAHKNTAGSDTQVEYDSSKRAETSKTEEIQKVHSKEKLRAPSGDQLIKRE ERESGDTGFKPYIQYLSQRKGFLYFSLAIITHIIFIVGQVIQSYWLAANIQNSHVSRVTMFTVYSVIGCSLAVFLLLRSFFIVQLGCGASESIFSTLLTS LFRAPMSFYDSTPLGRILSRVSSDLSVTDLEVAFRLTIAIGSTMNTYFNFAVLAFLTWPVLFVIIPMIYLNIVLQRYYFASAKELMRINGTSKSSVASHL AESIAGAMTIRAFGEEARFFSKNLDLIDRNASPYFHTFTADEWLIQRLELLCAIVLSSSTLTMILLHLTASASGFIGMELSYGLSLNVFLVFSAQYQCSV SNSIISVERLEQYMHIPSEAPEVIETNRPSTNWPAVGKVEIFNLKVRYRPNAPLVLQGITCTIEGRHKIGIVGRTGSGKTTFISALFRLVEPTEGKIVID GLDISTIGLHDLRSHFAVIPQDPTLFVGSVRYNLDPLSKHTDQEIWEVLEKCHLREAIQEKEEGLNSLVAQDGSNWSMGQRQLFCLGRALLKRSRILVLD EATASIDNATDSLLQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPLKLMNKEGSLFGQLVKEYWSRTANSRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	0	1
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.004G005301 [exp]	13.52	0.6510
AT3G16300			Uncharacterised protein family...		Potri.001G188000 [exp]	14.42	0.6309
AT2G45730			eukaryotic initiation factor 3...		Potri.005G238200 [exp]	17.60	0.6152
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.013G094400 [exp]	25.98	0.6302
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Potri.018G091500 [exp]	26.49	0.6090
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.015G072400 [exp]	32.18	0.6086
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.012G082100 [exp]	34.29	0.5634
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	37.49	0.6038
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.006G156176 [exp]	38.88	0.6267
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.002G004000 [exp]	41.89	0.5771	Pt-HMG1.3

Compare expression of checked genes

Potri.001G095600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.